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L3_098_000G1_scaffold_1217

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_1217_1
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(617..928)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=U5RTR5_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK16948.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_098_000G1_scaffold_1217_2
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1348..1932)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J333_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT26647.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Predicted HD superfamily hydrolase involved in NAD metabolism
L3_098_000G1_scaffold_1217_3
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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2155..2535
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6N9W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC07910.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
transcriptional regulator, GntR family
L3_098_000G1_scaffold_1217_4
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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2540..3415
DNA (876bp) protein (292aa)
ABC transporter ATP-binding protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NNU5_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC07911.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
ABC-type multidrug transport system, ATPase component
L3_098_000G1_scaffold_1217_5
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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3412..4071
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44945.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_098_000G1_scaffold_1217_6
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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4081..4746
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AFR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82875.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L3_098_000G1_scaffold_1217_7
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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4856..6511
DNA (1656bp) protein (552aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RPE0_9FIRM
L3_098_000G1_scaffold_1217_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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6654..7499
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44940.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Cell Wall Hydrolase.
L3_098_000G1_scaffold_1217_9
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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7514..9001
DNA (1488bp) protein (496aa)
threonine synthase (EC:4.2.3.1)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44939.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_098_000G1_scaffold_1217_10
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9030..9809
DNA (780bp) protein (260aa)
HD domain protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6D7_BLAHA
HD domain protein {ECO:0000313|EMBL:EEX22719.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
HD domain.
L3_098_000G1_scaffold_1217_11
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10152..11216
DNA (1065bp) protein (355aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6D6_BLAHA
L3_098_000G1_scaffold_1217_12
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11260..12741
DNA (1482bp) protein (494aa)
SpoIID/LytB domain protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6D5_BLAHA
SpoIID/LytB domain protein {ECO:0000313|EMBL:EEX22717.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
SpoIID/LytB domain
L3_098_000G1_scaffold_1217_13
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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12798..13757
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44934.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Predicted membrane protein
L3_098_000G1_scaffold_1217_14
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14085..15104
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Lachnospiraceae RepID=C9L6D3_BLAHA
L3_098_000G1_scaffold_1217_15
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15119..17536
DNA (2418bp) protein (806aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AFQ4_9FIRM
L3_098_000G1_scaffold_1217_16
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

17550..18161
DNA (612bp) protein (204aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHU4_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDC44924.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_098_000G1_scaffold_1217_17
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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18243..19268
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAL8_9FIRM
L3_098_000G1_scaffold_1217_18
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19327..20601)
DNA (1275bp) protein (425aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NNW2_9FIRM
L3_098_000G1_scaffold_1217_19
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20616..21713)
DNA (1098bp) protein (366aa)
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=3 Tax=Lachnospiraceae RepID=C9L6C7_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC07927.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
L3_098_000G1_scaffold_1217_20
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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21906..23993
DNA (2088bp) protein (696aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RP32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44841.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_098_000G1_scaffold_1217_21
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24208..25863
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6C5_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX22707.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_098_000G1_scaffold_1217_22
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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26226..28640
DNA (2415bp) protein (805aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6N9Y3_9FIRM
L3_098_000G1_scaffold_1217_23
unknown

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28852..28947
DNA (96bp) protein (32aa)

This feature has no annotations

L3_098_000G1_scaffold_1217_24
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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28958..29458
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79336.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
acetyltransferase
L3_098_000G1_scaffold_1217_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29512..29820)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83469.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_098_000G1_scaffold_1217_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29933..30100
DNA (168bp) protein (56aa)
Uncharacterized protein n=7 Tax=Clostridiales RepID=D5Q7G4_CLODI
Helix-turn-helix.
Uncharacterized protein {ECO:0000313|EMBL:CCK88696.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Displaying 26 items

View Taxonomy