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L3_098_000G1_scaffold_3396

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_3396_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..594)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46263.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
D-alanyl-D-alanine carboxypeptidase
L3_098_000G1_scaffold_3396_2
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(674..970)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W0L9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGN34251.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_098_000G1_scaffold_3396_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1105..1362)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YLS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM54619.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_098_000G1_scaffold_3396_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1400..2245)
DNA (846bp) protein (282aa)
Resolvase protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YLS6_9FIRM
Resolvase protein {ECO:0000313|EMBL:EHM54618.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_098_000G1_scaffold_3396_5
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2230..2883)
DNA (654bp) protein (218aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFJ7_CLOSC
ABC-type antimicrobial peptide transport system, ATPase component
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:CBK76471.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_098_000G1_scaffold_3396_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2895..4340)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45901.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_098_000G1_scaffold_3396_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4345..5568)
DNA (1224bp) protein (408aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFJ6_CLOSC
ABC-type transport system, involved in lipoprotein release, permease component
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBK76470.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_098_000G1_scaffold_3396_8
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5584..6102)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFJ5_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK76469.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_098_000G1_scaffold_3396_9
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6279..6968
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG69_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK76468.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_098_000G1_scaffold_3396_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6961..8259
DNA (1299bp) protein (433aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
His Kinase A (Phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DFJ3_CLOSC
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_098_000G1_scaffold_3396_11
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8318..8665)
DNA (348bp) protein (116aa)
Sigma-54 dependent response regulator n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SFI0_9FIRM
Sigma-54 dependent response regulator {ECO:0000313|EMBL:CDC56339.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
response regulator receiver:transcriptional regulatory protein, C-terminal
L3_098_000G1_scaffold_3396_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9193..9477
DNA (285bp) protein (95aa)
Transcriptional regulator, LuxR family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FX81_9FIRM
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEG92813.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
salavaricin two-component response regulator
L3_098_000G1_scaffold_3396_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9597..11948)
DNA (2352bp) protein (784aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KVR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34291.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
lipoprotein release ABC transporter permease
L3_098_000G1_scaffold_3396_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11932..12627)
DNA (696bp) protein (232aa)
ABC transporter ATP-binding protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZEN4_EUBR3
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ACR74550.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000G1_scaffold_3396_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12691..13920)
DNA (1230bp) protein (410aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WPI6_9CLOT
putative sensory transduction histidine kinase
L3_098_000G1_scaffold_3396_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13917..14615)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=C4ZEN6_EUBR3
two component transcriptional regulator, winged helix family
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL08398.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying 16 items

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