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L3_098_000M1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_52_1
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..769
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A914_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ22580.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_098_000M1_scaffold_52_2
unknown

Not on your lists

883..1095
DNA (213bp) protein (71aa)

This feature has no annotations

L3_098_000M1_scaffold_52_3
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1161..2642
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2ADS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ22579.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_098_000M1_scaffold_52_4
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2642..3673
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A811_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ22578.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
ATPase AAA
L3_098_000M1_scaffold_52_5
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3837..3944
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJ94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87402.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_098_000M1_scaffold_52_6
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3949..5781
DNA (1833bp) protein (611aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87401.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_098_000M1_scaffold_52_7
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5884..6294
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87399.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_098_000M1_scaffold_52_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6283..7059)
DNA (777bp) protein (259aa)
ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA7_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA81063.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_098_000M1_scaffold_52_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7052..7819)
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24595.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_098_000M1_scaffold_52_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7920..8573
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81061.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_098_000M1_scaffold_52_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8592..9986
DNA (1395bp) protein (465aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=2 Tax=Clostridium RepID=B6FSA4_9CLOT
L3_098_000M1_scaffold_52_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10066..11151
DNA (1086bp) protein (362aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EEA81059.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EEA81059.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Clostridium RepID=B6FSA3_9CLOT
L3_098_000M1_scaffold_52_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11248..13248
DNA (2001bp) protein (667aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=3 Tax=Clostridium RepID=R6PJU5_9CLOT
L3_098_000M1_scaffold_52_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13255..13926
DNA (672bp) protein (224aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Clostridium RepID=B6FS99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24604.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_098_000M1_scaffold_52_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14015..14710
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24605.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter ATP-binding protein
L3_098_000M1_scaffold_52_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14710..16278
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81167.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC transporter permease
L3_098_000M1_scaffold_52_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16297..16776
DNA (480bp) protein (160aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=2 Tax=Clostridium RepID=B6FS96_9CLOT
L3_098_000M1_scaffold_52_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16887..18437
DNA (1551bp) protein (517aa)
Transporter, SSS family n=2 Tax=Clostridium RepID=B6FS95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24611.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Na+/solute symporter
L3_098_000M1_scaffold_52_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18670..19692
DNA (1023bp) protein (341aa)
Protein RecA n=2 Tax=Clostridium RepID=B6FS94_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
protein RecA
L3_098_000M1_scaffold_52_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19694..20308
DNA (615bp) protein (205aa)
Regulatory protein RecX n=2 Tax=Clostridium RepID=B6FS93_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
recX; recombination regulator RecX
L3_098_000M1_scaffold_52_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20381..21934
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonuclease Y n=2 Tax=Clostridium RepID=B6FS92_9CLOT
metal dependent phosphohydrolase
L3_098_000M1_scaffold_52_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22008..22544
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Clostridium RepID=B6FS91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24617.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_098_000M1_scaffold_52_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22609..23151
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PV51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24619.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_098_000M1_scaffold_52_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23166..24497)
DNA (1332bp) protein (444aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS89_9CLOT
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEA81159.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_098_000M1_scaffold_52_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24634..25089
DNA (456bp) protein (152aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FS88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24637.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, BadM/Rrf2 family
L3_098_000M1_scaffold_52_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25101..26282
DNA (1182bp) protein (394aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=2 Tax=Clostridium RepID=B6FS87_9CLOT
L3_098_000M1_scaffold_52_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26314..26754
DNA (441bp) protein (147aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Clostridium RepID=B6FS86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24639.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_098_000M1_scaffold_52_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26777..27865
DNA (1089bp) protein (363aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Clostridium RepID=B6FS85_9CLOT
L3_098_000M1_scaffold_52_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27869..28675
DNA (807bp) protein (269aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS84_9CLOT
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEA81154.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_098_000M1_scaffold_52_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28819..29832
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Clostridium RepID=B6FS83_9CLOT
Displaying items 1-30 of 98 in total

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