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L3_098_000M1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_56_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43..1992)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45705.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_098_000M1_scaffold_56_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1967..2869)
DNA (903bp) protein (301aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGA2_9FIRM
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:EGJ45706.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative ABC transporter ATP-binding protein
L3_098_000M1_scaffold_56_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(2866..3237)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YI92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14921.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
transcriptional regulator, GntR family
L3_098_000M1_scaffold_56_4
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3461..5089)
DNA (1629bp) protein (543aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:BAL01299.1}; EC=1.5.1.12 {ECO:0000313|EMBL:BAL01299.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KZA7_OSCVS
L3_098_000M1_scaffold_56_5
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5189..6073)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MEN5_9FIRM
L3_098_000M1_scaffold_56_6
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6139..7101)
DNA (963bp) protein (321aa)
Phosphoglycerate dehydrogenase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9ME01_9FIRM
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EOS69269.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
D-3-phosphoglycerate dehydrogenase
L3_098_000M1_scaffold_56_7
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7154..8623)
DNA (1470bp) protein (490aa)
Na+/H+ antiporter NhaC n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9ME37_9FIRM
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EOS69270.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
transporter, NhaC family (TC 2.A.35)
L3_098_000M1_scaffold_56_8
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8821..9720
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MF22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS69271.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
LysR family transcriptional regulator
L3_098_000M1_scaffold_56_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10168..10971
DNA (804bp) protein (268aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGA4_9FIRM
L3_098_000M1_scaffold_56_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11033..11800
DNA (768bp) protein (256aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGA5_9FIRM
L3_098_000M1_scaffold_56_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11920..13176
DNA (1257bp) protein (419aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGA6_9FIRM
L3_098_000M1_scaffold_56_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13341..13853
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45711.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
HD superfamily metal-dependent phosphohydrolase
L3_098_000M1_scaffold_56_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14078..14749
DNA (672bp) protein (224aa)
putative glucosamine-1-phosphate N-acetyltransferase (EC:2.3.1.157)
Putative UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXQ0_9FIRM
Putative UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase {ECO:0000313|EMBL:EHM37182.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_098_000M1_scaffold_56_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14868..15854
DNA (987bp) protein (329aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
prs; phosphoribosyl pyrophosphate synthetase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGB0_9FIRM
L3_098_000M1_scaffold_56_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

15927..16520
DNA (594bp) protein (198aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YEW0_9FIRM
L3_098_000M1_scaffold_56_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16550..17251
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45640.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
methyltransferase, YaeB/AF_0241 family
L3_098_000M1_scaffold_56_17
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17382..18077)
DNA (696bp) protein (232aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02254 (EC:3.8.1.2)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DD40C9
HAD superfamily (Subfamily IA) hydrolase TIGR02254 {ECO:0000313|EMBL:CDE81619.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_098_000M1_scaffold_56_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18207..20366)
DNA (2160bp) protein (720aa)
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45797.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_098_000M1_scaffold_56_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20404..21123)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45798.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
aspartate racemase
L3_098_000M1_scaffold_56_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21145..21648)
DNA (504bp) protein (168aa)
5-nitroimidazole antibiotic resistance protein NimB n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH31_9FIRM
5-nitroimidazole antibiotic resistance protein NimB {ECO:0000313|EMBL:EDS09279.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
nimA; nitroimidazole resistance protein NimA
L3_098_000M1_scaffold_56_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21652..22866)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45799.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted ATP-grasp enzyme
L3_098_000M1_scaffold_56_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23079..24146)
DNA (1068bp) protein (356aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFT9_9FIRM
L3_098_000M1_scaffold_56_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24478..25890
DNA (1413bp) protein (471aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU0_9FIRM
miaB; isopentenyl-adenosine A37 tRNA methylthiolase
L3_098_000M1_scaffold_56_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26147..28762
DNA (2616bp) protein (872aa)
DNA mismatch repair protein MutS n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU1_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mutS; DNA mismatch repair protein MutS
L3_098_000M1_scaffold_56_25
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28827..29579
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=E4LX04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO27066.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
AAA ATPase
L3_098_000M1_scaffold_56_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29631..31655
DNA (2025bp) protein (675aa)
DNA mismatch repair protein MutL n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU3_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mutL; DNA mismatch repair protein MutL
L3_098_000M1_scaffold_56_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31697..32641
DNA (945bp) protein (315aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.8)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU5_9FIRM
L3_098_000M1_scaffold_56_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32701..32934
DNA (234bp) protein (78aa)
RNA-binding protein Hfq n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU6_9FIRM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_098_000M1_scaffold_56_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33067..34335
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45808.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_098_000M1_scaffold_56_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34395..35102
DNA (708bp) protein (236aa)
YggS family pyridoxal phosphate enzyme n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFU8_9FIRM
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:EGJ45809.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 119 in total

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