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L3_098_000M1_scaffold_105

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Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_105_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..206
DNA (204bp) protein (68aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE9_9FIRM
L3_098_000M1_scaffold_105_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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223..963
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY4_9FIRM
L3_098_000M1_scaffold_105_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1003..2160
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68667.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_098_000M1_scaffold_105_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2208..3389
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA sulfurtransferase ThiI n=3 Tax=Lachnospiraceae RepID=V8C1V1_RUMGN
thiazole biosynthesis/tRNA modification protein ThiI
L3_098_000M1_scaffold_105_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3442..3675)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B391_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43786.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS HPr component phosphorylation site.
L3_098_000M1_scaffold_105_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3800..5092
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=4 Tax=Clostridiales RepID=A7B392_RUMGN
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EGN43785.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MiaB-like tRNA modifying enzyme
L3_098_000M1_scaffold_105_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5200..5463
DNA (264bp) protein (88aa)
UPF0297 protein RUMGNA_02021 n=4 Tax=Clostridiales RepID=A7B393_RUMGN
UPF0297 protein HMPREF1201_01065 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_098_000M1_scaffold_105_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5470..5916
DNA (447bp) protein (149aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
YqgF family RNAse H domain-containing protein n=4 Tax=Clostridiales RepID=V8C0Z3_RUMGN
conserved hypothetical protein TIGR00250
L3_098_000M1_scaffold_105_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5942..6202
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B395_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43782.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1292).
L3_098_000M1_scaffold_105_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6238..6720
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68674.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Fe2+/Zn2+ uptake regulation proteins
L3_098_000M1_scaffold_105_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6744..8408
DNA (1665bp) protein (555aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B397_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21055.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L3_098_000M1_scaffold_105_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8412..9065
DNA (654bp) protein (218aa)
O-methyltransferase n=4 Tax=Clostridiales RepID=A7B398_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43779.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted O-methyltransferase
L3_098_000M1_scaffold_105_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9067..10299
DNA (1233bp) protein (411aa)
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=3 Tax=Lachnospiraceae RepID=A7B399_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43778.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_098_000M1_scaffold_105_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10273..10899)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B3A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_098_000M1_scaffold_105_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11174..12697
DNA (1524bp) protein (508aa)
Mg chelatase-like protein n=3 Tax=Lachnospiraceae RepID=A7B3A2_RUMGN
Mg chelatase-like protein {ECO:0000313|EMBL:ETD21051.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Mg chelatase-related protein
L3_098_000M1_scaffold_105_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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12710..13792
DNA (1083bp) protein (361aa)
DNA protecting protein DprA n=4 Tax=Clostridiales RepID=A7B3A3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43775.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA protecting protein DprA
L3_098_000M1_scaffold_105_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13827..15899
DNA (2073bp) protein (691aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=3 Tax=Lachnospiraceae RepID=A7B3A4_RUMGN
L3_098_000M1_scaffold_105_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16028..16807
DNA (780bp) protein (260aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=4 Tax=Clostridiales RepID=A7B3G5_RUMGN
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pleiotropic transcriptional repressor
L3_098_000M1_scaffold_105_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16890..17216
DNA (327bp) protein (109aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B3G6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43771.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_098_000M1_scaffold_105_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17340..17624
DNA (285bp) protein (95aa)
10 kDa chaperonin n=4 Tax=Clostridiales RepID=A7B3G7_RUMGN
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Co-chaperonin GroES (HSP10)
L3_098_000M1_scaffold_105_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17681..19309
DNA (1629bp) protein (543aa)
60 kDa chaperonin n=4 Tax=Clostridiales RepID=A7B3G8_RUMGN
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
chaperonin GroL
L3_098_000M1_scaffold_105_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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19309..19464
DNA (156bp) protein (52aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B3G9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43768.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_098_000M1_scaffold_105_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19596..21050
DNA (1455bp) protein (485aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=4 Tax=Clostridiales RepID=A7B3H0_RUMGN
L3_098_000M1_scaffold_105_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21108..21791
DNA (684bp) protein (228aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3H1_RUMGN
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDN77497.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
N-acetylmuramoyl-L-alanine amidase
L3_098_000M1_scaffold_105_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21886..22449
DNA (564bp) protein (188aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=2 Tax=Ruminococcus gnavus RepID=A7B3H2_RUMGN
L3_098_000M1_scaffold_105_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22442..22954
DNA (513bp) protein (171aa)
HAD superfamily phosphatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZA5_9FIRM
HAD superfamily phosphatase {ECO:0000313|EMBL:CCZ68689.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_098_000M1_scaffold_105_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23036..23593
DNA (558bp) protein (186aa)
Elongation factor P n=4 Tax=Clostridiales RepID=A7B3H4_RUMGN
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
translation elongation factor P (EF-P)
L3_098_000M1_scaffold_105_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23818..24717
DNA (900bp) protein (300aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B3H5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21038.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_098_000M1_scaffold_105_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24974..25771)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3H6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77502.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ABC transporter permease
L3_098_000M1_scaffold_105_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25765..26463)
DNA (699bp) protein (233aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B3H7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43759.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
multidrug ABC transporter ATPase
Displaying items 1-30 of 82 in total

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