ggKbase home page

L3_098_000M1_scaffold_182

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_182_1
unknown

Not on your lists

comp(99..227)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_098_000M1_scaffold_182_2
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

473..1393
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6V0_9CLOT
L3_098_000M1_scaffold_182_3
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1440..2060
DNA (621bp) protein (207aa)
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AHN7_9CLOT
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CCX38871.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hydrolase
L3_098_000M1_scaffold_182_4
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

2107..2748
DNA (642bp) protein (214aa)
Acetyltransferase ribosomal protein N-acetylase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YPI3_9FIRM
Acetyltransferase ribosomal protein N-acetylase {ECO:0000313|EMBL:CDD30486.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
alanine acetyltransferase
L3_098_000M1_scaffold_182_5
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2716..3360)
DNA (645bp) protein (215aa)
RNA polymerase sigma-F factor n=1 Tax=Clostridium sp. CAG:242 RepID=R6D2U4_9CLOT
RNA polymerase sigma-F factor {ECO:0000313|EMBL:CDA78326.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
sigF; RNA polymerase sigma-F factor
L3_098_000M1_scaffold_182_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3350..3793)
DNA (444bp) protein (148aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAG2_9CLOT
Anti-sigma F factor {ECO:0000313|EMBL:CCX38874.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_098_000M1_scaffold_182_7
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3790..4119)
DNA (330bp) protein (110aa)
Anti-sigma factor antagonist n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6V4_9CLOT
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_098_000M1_scaffold_182_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4253..5533)
DNA (1281bp) protein (427aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AHP2_9CLOT
Bifunctional protein FolC {ECO:0000313|EMBL:CCX38876.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_098_000M1_scaffold_182_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5533..8154)
DNA (2622bp) protein (874aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
valS; Valine-tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N1J9_9CLOT
L3_098_000M1_scaffold_182_10
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

8579..10171
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YPQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30536.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Putative peptidoglycan-binding domain-containing protein
L3_098_000M1_scaffold_182_11
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10364..11521
DNA (1158bp) protein (386aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VSS9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04134.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
transcriptional regulator, CdaR family
L3_098_000M1_scaffold_182_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

11817..12656
DNA (840bp) protein (280aa)
Cell division ATP-binding protein FtsE n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y4A4_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:CDD28690.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
cell division ATP-binding protein FtsE
L3_098_000M1_scaffold_182_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12686..13597
DNA (912bp) protein (304aa)
Cell division protein FtsX n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4M9_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Cell division protein
L3_098_000M1_scaffold_182_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13590..14777
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003688A00
Peptidase, M23 family {ECO:0000313|EMBL:EJF41968.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Membrane-bound metallopeptidase
L3_098_000M1_scaffold_182_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14876..15838)
DNA (963bp) protein (321aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase RluA family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2L2_9CLOT
L3_098_000M1_scaffold_182_16
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15835..16299)
DNA (465bp) protein (155aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7L6_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CCX37057.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_098_000M1_scaffold_182_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16296..17081)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ACG9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37056.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_098_000M1_scaffold_182_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17195..19357)
DNA (2163bp) protein (721aa)
Tex-like protein N-terminal domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N515_9CLOT
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:CDC03424.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Transcriptional accessory protein
L3_098_000M1_scaffold_182_19
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19594..20196
DNA (603bp) protein (201aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBQ1_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EET61854.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_098_000M1_scaffold_182_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20256..21158
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ABL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36771.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_098_000M1_scaffold_182_21
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21266..21571)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JS06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE66785.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein
L3_098_000M1_scaffold_182_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21718..22299)
DNA (582bp) protein (194aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Fumarate hydratase class I n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HUF4_9FIRM
Fumarate hydratase class I {ECO:0000313|EMBL:CCY33423.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L3_098_000M1_scaffold_182_23
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22301..23143)
DNA (843bp) protein (281aa)
fumarase alpha subunit (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MF71_9FIRM
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:EOS69301.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L3_098_000M1_scaffold_182_24
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(23172..24773)
DNA (1602bp) protein (534aa)
L-aspartate oxidase (EC:1.4.3.16)
fumarate reductase n=1 Tax=Blautia producta RepID=UPI0003663843
Succinate dehydrogenase flavoprotein subunit {ECO:0000313|EMBL:CDC91655.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L3_098_000M1_scaffold_182_25
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(24787..25461)
DNA (675bp) protein (225aa)
Putative ferredoxin n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VBG4_9FIRM
Putative ferredoxin {ECO:0000313|EMBL:CDC91654.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
hypothetical protein
L3_098_000M1_scaffold_182_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25480..26337)
DNA (858bp) protein (286aa)
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases n=2 Tax=Ruminococcus RepID=R7CH11_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases {ECO:0000313|EMBL:CDD76613.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_098_000M1_scaffold_182_27
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(26330..27373)
DNA (1044bp) protein (348aa)
Putative anaerobic sulfite reductase A subunit n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RSF0_9FIRM
Putative anaerobic sulfite reductase A subunit {ECO:0000313|EMBL:CCZ35812.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
hypothetical protein
L3_098_000M1_scaffold_182_28
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(27377..28345)
DNA (969bp) protein (323aa)
4Fe-4S ferredoxin n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031928EE
4Fe-4S ferredoxin {ECO:0000313|EMBL:CDA62702.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
L3_098_000M1_scaffold_182_29
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(28333..28776)
DNA (444bp) protein (148aa)
Coenzyme F420-reducing hydrogenase delta subunit n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RAJ6_9FIRM
Coenzyme F420-reducing hydrogenase delta subunit {ECO:0000313|EMBL:CCZ35814.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Coenzyme F420-reducing hydrogenase, delta subunit
L3_098_000M1_scaffold_182_30
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28767..30755)
DNA (1989bp) protein (663aa)
4Fe-4S binding domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LCJ8_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EET61662.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
FAD dependent oxidoreductase
Displaying items 1-30 of 61 in total

View Taxonomy