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L3_098_000M1_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_197_1
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

274..561
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87426.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_098_000M1_scaffold_197_2
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

555..1040
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87427.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_098_000M1_scaffold_197_3
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1033..1215
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87428.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
DNA binding domain, excisionase family
L3_098_000M1_scaffold_197_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1453..2244)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FSA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24509.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase, subfamily IIB
L3_098_000M1_scaffold_197_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2494..3408)
DNA (915bp) protein (305aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Clostridium RepID=B6FSA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24500.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small-conductance mechanosensitive channel
L3_098_000M1_scaffold_197_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3418..4269)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSB0_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00726
L3_098_000M1_scaffold_197_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4280..4633)
DNA (354bp) protein (118aa)
UPF0102 protein CLONEX_03036 n=2 Tax=Clostridium RepID=B6FSB1_9CLOT
UPF0102 protein CLONEX_03036 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00252
L3_098_000M1_scaffold_197_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4670..5428)
DNA (759bp) protein (253aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Clostridium RepID=B6FSB2_9CLOT
L3_098_000M1_scaffold_197_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5421..5966)
DNA (546bp) protein (182aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSB3_9CLOT
L3_098_000M1_scaffold_197_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5992..6843)
DNA (852bp) protein (284aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridium RepID=B6FSB4_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosome biogenesis GTP-binding protein YlqF
L3_098_000M1_scaffold_197_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6855..7427)
DNA (573bp) protein (191aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Signal peptidase I n=2 Tax=Clostridium RepID=B6FSB5_9CLOT
signal peptidase I
L3_098_000M1_scaffold_197_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7492..7839)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Clostridium RepID=B6FSB6_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rplS; 50S ribosomal protein L19
L3_098_000M1_scaffold_197_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7936..8631)
DNA (696bp) protein (232aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridium RepID=B6FSB7_9CLOT
L3_098_000M1_scaffold_197_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8674..9180)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=2 Tax=Clostridium RepID=B6FSB8_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rimM; 16S rRNA-processing protein RimM
L3_098_000M1_scaffold_197_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9229..9456)
DNA (228bp) protein (76aa)
UPF0109 protein CLONEX_03044 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSB9_9CLOT
UPF0109 protein CLONEX_03044 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RNA-binding protein (KH domain)
L3_098_000M1_scaffold_197_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9480..9725)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Clostridium RepID=B6FSC0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S16P
L3_098_000M1_scaffold_197_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9774..11123)
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=2 Tax=Clostridium RepID=B6FSC1_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
signal recognition particle protein
L3_098_000M1_scaffold_197_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11125..11475)
DNA (351bp) protein (117aa)
Helix-turn-helix protein, YlxM/p13 family n=2 Tax=Clostridium RepID=B6FSC2_9CLOT
UPF0122 protein CLONEX_03047 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_098_000M1_scaffold_197_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11547..12122)
DNA (576bp) protein (192aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FSC3_9CLOT
L3_098_000M1_scaffold_197_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12225..13136)
DNA (912bp) protein (304aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EEA81080.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEA81080.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Peptidase, S8/S53 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSC4_9CLOT
peptidase S8 and S53 subtilisin kexin sedolisin
L3_098_000M1_scaffold_197_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13299..13574
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81081.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_098_000M1_scaffold_197_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13589..13714)
DNA (126bp) protein (42aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24469.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_098_000M1_scaffold_197_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13815..14339
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSC7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81083.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_098_000M1_scaffold_197_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14332..14616
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSC8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24467.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_098_000M1_scaffold_197_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14671..15147)
DNA (477bp) protein (159aa)
Thioesterase family protein n=2 Tax=Clostridium RepID=B6FSC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24466.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Acyl-CoA hydrolase
L3_098_000M1_scaffold_197_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15234..15977
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium nexile CAG:348 RepID=R6PLM7_9CLOT
L3_098_000M1_scaffold_197_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16029..16886)
DNA (858bp) protein (286aa)
Phospholipase, patatin family n=2 Tax=Clostridium RepID=B6FSD1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24464.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted esterase of the alpha-beta hydrolase superfamily
L3_098_000M1_scaffold_197_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17055..18692
DNA (1638bp) protein (546aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSD2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24463.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_098_000M1_scaffold_197_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18765..20075)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QR96_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24462.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
CBS/transporter associated domain-containing protein
L3_098_000M1_scaffold_197_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20206..21210)
DNA (1005bp) protein (335aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=2 Tax=Clostridium RepID=B6FSD5_9CLOT
Displaying items 1-30 of 66 in total

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