ggKbase home page

L3_098_000M1_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_236_1
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(390..2603)
DNA (2214bp) protein (738aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TAT1_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN26518.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
L3_098_000M1_scaffold_236_2
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2596..3747)
DNA (1152bp) protein (384aa)
AAA ATPase central domain protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SWK9_SYNGF
ATPase AAA
AAA ATPase central domain protein {ECO:0000313|EMBL:ADY56849.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L3_098_000M1_scaffold_236_3
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3916..5559)
DNA (1644bp) protein (548aa)
Resolvase N-terminal domain protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EUJ3_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDE06250.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
putative recombinase
L3_098_000M1_scaffold_236_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5581..6423)
DNA (843bp) protein (281aa)
Recombinase n=2 Tax=Clostridiales RepID=R6HVZ6_9FIRM
Recombinase {ECO:0000313|EMBL:CDB42058.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_098_000M1_scaffold_236_5
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6429..7973)
DNA (1545bp) protein (515aa)
yokA; resolvase YokA (EC:3.1.-.-)
Resolvase n-terminal:recombinase putative n=1 Tax=Clostridium sp. CAG:352 RepID=R6R457_9CLOT
Resolvase n-terminal:recombinase putative {ECO:0000313|EMBL:CDC37886.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_098_000M1_scaffold_236_6

Not on your lists

comp(8078..8257)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUQ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKC73985.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_000M1_scaffold_236_7
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8273..10228)
DNA (1956bp) protein (652aa)
Uncharacterized protein n=2 Tax=root RepID=R6QMP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC37893.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Rad3-related DNA helicases
L3_098_000M1_scaffold_236_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10959..12803)
DNA (1845bp) protein (615aa)
Resolvase N-terminal domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2B5_9CLOT
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CCX36948.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_098_000M1_scaffold_236_9
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12870..13055)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A794_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36947.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_098_000M1_scaffold_236_10
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13052..13576)
DNA (525bp) protein (175aa)
Growth inhibitor n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDI7_9FIRM
Growth inhibitor
Growth inhibitor {ECO:0000313|EMBL:CBK88259.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_098_000M1_scaffold_236_11
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14200..14649)
DNA (450bp) protein (150aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Firmicutes RepID=H1BDT0_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO23345.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_098_000M1_scaffold_236_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15211..15621)
DNA (411bp) protein (137aa)
Transcriptional regulatory protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DD51_CLOS4
Transcriptional regulatory protein {ECO:0000313|EMBL:ERJ00750.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
transcriptional regulatory protein
L3_098_000M1_scaffold_236_13
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15621..16013)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UHB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGG86856.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Mn-dependent transcriptional regulator
L3_098_000M1_scaffold_236_14
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16034..17770)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1AJD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ46809.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_098_000M1_scaffold_236_15
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17785..19530)
DNA (1746bp) protein (582aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDE9_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK88221.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
ABC-type multidrug transport system, ATPase and permease components
L3_098_000M1_scaffold_236_16
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19527..20999)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W1Y7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38739.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_098_000M1_scaffold_236_17
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21012..21752)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W1A1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38740.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_098_000M1_scaffold_236_18
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21752..22336)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2H3_9CLOT
conserved hypothetical integral membrane protein TIGR02185
Uncharacterized protein {ECO:0000313|EMBL:EOQ38741.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_098_000M1_scaffold_236_19
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22540..23532
DNA (993bp) protein (331aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LFV0_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL18711.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_098_000M1_scaffold_236_20
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23583..25367)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BDS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23336.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_098_000M1_scaffold_236_21
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25401..26189)
DNA (789bp) protein (263aa)
Sortase, SrtB family n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDJ6_9FIRM
sortase, SrtB family
Sortase, SrtB family {ECO:0000313|EMBL:CBK88268.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_098_000M1_scaffold_236_22
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26208..26960)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDJ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK88269.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_098_000M1_scaffold_236_23
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26987..27391)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BDR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC80858.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
hypothetical protein
L3_098_000M1_scaffold_236_24
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27388..29745)
DNA (2358bp) protein (786aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BDR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23332.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Domain of unknown function DUF87.
L3_098_000M1_scaffold_236_25
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29738..30151)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BDR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23331.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
conserved hypothetical protein
L3_098_000M1_scaffold_236_26
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30156..30371)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MX92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS75301.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_098_000M1_scaffold_236_27
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(30388..31224)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDJ9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK88271.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_098_000M1_scaffold_236_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31297..31515)
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8H7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15922.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_098_000M1_scaffold_236_29
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(31541..31885)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JDK0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK88272.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L3_098_000M1_scaffold_236_30
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31872..33695)
DNA (1824bp) protein (608aa)
Type IV secretory pathway VirD4 components n=2 Tax=Firmicutes RepID=R6U8E6_9CLOT
Type IV secretory pathway VirD4 components {ECO:0000313|EMBL:CDC80830.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Type IV secretory pathway, VirD4 components
Displaying items 1-30 of 46 in total

View Taxonomy