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L3_098_000M1_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_238_1
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..273
DNA (273bp) protein (91aa)
Flavodoxins n=3 Tax=Clostridiales RepID=D4MZ90_9FIRM
Flavodoxins
Flavodoxin {ECO:0000313|EMBL:EDS23066.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_098_000M1_scaffold_238_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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302..1069
DNA (768bp) protein (256aa)
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit n=3 Tax=Clostridiales RepID=D4MZ91_9FIRM
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Cupin domain protein {ECO:0000313|EMBL:EDS23067.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_098_000M1_scaffold_238_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1079..1942
DNA (864bp) protein (288aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NX63_9CLOT
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EDS23068.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Aldo/keto reductases, related to diketogulonate reductase
L3_098_000M1_scaffold_238_4
unknown

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2005..2163
DNA (159bp) protein (53aa)

This feature has no annotations

L3_098_000M1_scaffold_238_5
unknown

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2603..2845
DNA (243bp) protein (81aa)
Excisionase from transposon Tn916 n=3 Tax=Clostridiales RepID=D4MZ92_9FIRM
Excisionase from transposon Tn916.
Excisionase from transposon Tn916 {ECO:0000313|EMBL:CBL37937.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_6
unknown

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2912..3130
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NX65_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL37938.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_7
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3540..3932)
DNA (393bp) protein (131aa)
Transposase and inactivated derivatives n=3 Tax=Clostridiales RepID=D4MZ94_9FIRM
Transposase and inactivated derivatives
Transposase {ECO:0000313|EMBL:EFV18072.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_098_000M1_scaffold_238_8
unknown

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comp(4311..5471)
DNA (1161bp) protein (387aa)
isoaspartyl dipeptidase IadA (EC:3.4.19.5)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Isoaspartyl dipeptidase n=3 Tax=Clostridiales RepID=D4MZ95_9FIRM
L3_098_000M1_scaffold_238_9
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5553..6998)
DNA (1446bp) protein (482aa)
Transporter, NhaC family (TC 2.A.35) n=3 Tax=Clostridiales RepID=D4MZ96_9FIRM
transporter, NhaC family (TC 2.A.35)
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EFV18070.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_098_000M1_scaffold_238_10
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7120..7746)
DNA (627bp) protein (209aa)
Uridine kinase {ECO:0000256|RuleBase:RU003825, ECO:0000256|SAAS:SAAS00007563}; EC=2.7.1.48 {ECO:0000256|RuleBase:RU003825, ECO:0000256|SAAS:SAAS00007538};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
uridine kinase (EC:2.7.1.48)
Uridine kinase n=2 Tax=Clostridiales RepID=B0NX69_9CLOT
L3_098_000M1_scaffold_238_11
unknown

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comp(7814..8815)
DNA (1002bp) protein (334aa)
Integrase core domain n=2 Tax=Clostridiales RepID=D4MZ97_9FIRM
Integrase core domain.
Integrase core domain {ECO:0000313|EMBL:CBL37942.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9238..9906
DNA (669bp) protein (223aa)
Type III restriction enzyme n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VGP2_9FIRM
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EDS23077.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
L3_098_000M1_scaffold_238_13
unknown

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9981..10700
DNA (720bp) protein (240aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0NX73_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL37945.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_14
unknown

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10972..11433
DNA (462bp) protein (154aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:CBL37946.1}; EC=3.1.3.48 {ECO:0000313|EMBL:CBL37946.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Protein-tyrosine-phosphatase n=2 Tax=Clostridiales RepID=D4MZA1_9FIRM
L3_098_000M1_scaffold_238_15
unknown

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comp(11443..12192)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=D4MZA2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL37947.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_16
unknown

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comp(12225..13718)
DNA (1494bp) protein (498aa)
Predicted DNA-binding protein with the Helix-hairpin-helix motif n=2 Tax=Clostridiales RepID=D4MZA3_9FIRM
Predicted DNA-binding protein with the Helix-hairpin-helix motif
Predicted DNA-binding protein with the Helix-hairpin-helix motif {ECO:0000313|EMBL:CBL37948.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_17
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13863..14177)
DNA (315bp) protein (105aa)
PTS system, fructose-specific, IIB component (EC:2.7.1.69)
PTS system, fructose-specific, IIB component n=3 Tax=Clostridiales RepID=D4MZA4_9FIRM
Putative fructose-like phosphotransferase enzyme IIB component 2 {ECO:0000313|EMBL:EKY19571.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_098_000M1_scaffold_238_18
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14416..15528
DNA (1113bp) protein (371aa)
GntR family Bacterial regulatory protein n=2 Tax=Lachnospiraceae RepID=E5VGN6_9FIRM
GntR family Bacterial regulatory protein {ECO:0000313|EMBL:EFV18060.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
transcriptional regulator, GntR family
L3_098_000M1_scaffold_238_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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15551..17047
DNA (1497bp) protein (499aa)
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L-arabinose isomerase n=3 Tax=Clostridiales RepID=D4MZA6_9FIRM
L3_098_000M1_scaffold_238_20
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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17080..18657
DNA (1578bp) protein (526aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PV12_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EKY19574.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Sugar (pentulose and hexulose) kinases
L3_098_000M1_scaffold_238_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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18672..19364
DNA (693bp) protein (231aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose 5-phosphate 4-epimerase n=2 Tax=Lachnospiraceae RepID=R5Z879_9FIRM
L-ribulose 5-phosphate 4-epimerase {ECO:0000313|EMBL:CDA32939.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_238_22
unknown

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19421..20434
DNA (1014bp) protein (338aa)
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096, ECO:0000313|EMBL:CBL37954.1}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096, ECO:0000313|EMBL:CBL37954.1};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Aldose 1-epimerase n=2 Tax=Clostridiales RepID=D4MZA9_9FIRM
L3_098_000M1_scaffold_238_23
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20577..22196
DNA (1620bp) protein (540aa)
Response regulator receiver domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PW12_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDS23088.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_098_000M1_scaffold_238_24
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22196..23662
DNA (1467bp) protein (489aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PV32_9FIRM
L3_098_000M1_scaffold_238_25
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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23850..24854
DNA (1005bp) protein (335aa)
Sugar-binding domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PV17_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EKY19579.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_098_000M1_scaffold_238_26
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25033..26550
DNA (1518bp) protein (506aa)
ABC transporter n=3 Tax=Lachnospiraceae RepID=E5VGM7_9FIRM
Putative sugar ABC transporter, ATP binding protein {ECO:0000313|EMBL:EKY19580.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_098_000M1_scaffold_238_27
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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26571..27593
DNA (1023bp) protein (341aa)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) n=5 Tax=Clostridiales RepID=D4MZB5_9FIRM
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
Branched-chain amino acid transport system/permease component {ECO:0000313|EMBL:CDA32933.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_238_28
unknown

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27593..28639
DNA (1047bp) protein (349aa)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) n=3 Tax=Clostridiales RepID=D4MZB6_9FIRM
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CBL37961.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_29
unknown

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28680..30164
DNA (1485bp) protein (495aa)
L-fucose isomerase and related proteins n=3 Tax=Clostridiales RepID=D4MZB7_9FIRM
L-fucose isomerase and related proteins
L-fucose isomerase and related proteins {ECO:0000313|EMBL:CBL37962.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_238_30
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30272..31309)
DNA (1038bp) protein (346aa)
Transcriptional regulator, LacI family n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PV21_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EKY19584.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
transcriptional regulator, LacI family
Displaying items 1-30 of 48 in total

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