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L3_098_000M1_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_271_1
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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153..1619
DNA (1467bp) protein (489aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Lysine--tRNA ligase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMI1_CLOPH
lysyl-tRNA synthetase
L3_098_000M1_scaffold_271_2
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1732..2607
DNA (876bp) protein (292aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J4Q2_9FIRM
L3_098_000M1_scaffold_271_3
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2594..3232
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J459_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT27614.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Vitamin B12 dependent methionine synthase activation subunit
L3_098_000M1_scaffold_271_4
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3257..5659
DNA (2403bp) protein (801aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RU86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75400.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
homocysteine S-methyltransferase
L3_098_000M1_scaffold_271_5
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5727..6212)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LXY9_CLOCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV69921.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_098_000M1_scaffold_271_6
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6223..7629)
DNA (1407bp) protein (469aa)
Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:217 RepID=R6JM75_9CLOT
L3_098_000M1_scaffold_271_7
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7801..8973)
DNA (1173bp) protein (391aa)
O-antigen polymerase n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2P594_9FIRM
O-antigen polymerase {ECO:0000313|EMBL:ERK45675.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
L3_098_000M1_scaffold_271_8
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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9439..10326
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02931.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
transcriptional regulator, LysR family
L3_098_000M1_scaffold_271_9
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10410..11399
DNA (990bp) protein (330aa)
predicted oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E42
Uncharacterized protein {ECO:0000313|EMBL:EOT24382.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
aldo/keto reductase
L3_098_000M1_scaffold_271_10
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11807..13450)
DNA (1644bp) protein (548aa)
Resolvase N-terminal domain protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EUJ3_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDE06250.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
resolvase domain-containing protein
L3_098_000M1_scaffold_271_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13473..14318)
DNA (846bp) protein (282aa)
Recombinase n=2 Tax=Clostridiales RepID=R6HVZ6_9FIRM
Recombinase {ECO:0000313|EMBL:CDB42058.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
recombinase
L3_098_000M1_scaffold_271_12
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14330..15874)
DNA (1545bp) protein (515aa)
yokA; resolvase YokA (EC:3.1.-.-)
Resolvase n-terminal:recombinase putative n=1 Tax=Clostridium sp. CAG:352 RepID=R6R457_9CLOT
Resolvase n-terminal:recombinase putative {ECO:0000313|EMBL:CDC37886.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_098_000M1_scaffold_271_13

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comp(15979..16158)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1U6U2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC73985.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_000M1_scaffold_271_14
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16173..16607)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QY44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC37889.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
site-specific recombinase, DNA invertase Pin
L3_098_000M1_scaffold_271_15
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16623..18575)
DNA (1953bp) protein (651aa)
Uncharacterized protein n=2 Tax=root RepID=R6QMP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC37893.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Rad3-related DNA helicases
L3_098_000M1_scaffold_271_16
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19148..19573)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QQ18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC37895.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Sigma-70, region 4.
L3_098_000M1_scaffold_271_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20016..20450)
DNA (435bp) protein (145aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUP9_9CLOT
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDO60699.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
two component transcriptional regulator, winged helix family
L3_098_000M1_scaffold_271_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20927..21286
DNA (360bp) protein (120aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUP6_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO60696.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Helix-turn-helix.
L3_098_000M1_scaffold_271_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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21515..22141
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27671.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
TetR family transcriptional regulator
L3_098_000M1_scaffold_271_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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22425..24182
DNA (1758bp) protein (586aa)
xenobiotic ABC transporter ATPase (EC:3.6.3.44)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27672.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_098_000M1_scaffold_271_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24175..25935
DNA (1761bp) protein (587aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27673.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC transporter-like protein
L3_098_000M1_scaffold_271_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25932..26876
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27674.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC transporter, permease subunit
L3_098_000M1_scaffold_271_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26866..27684
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27675.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC transporter, permease protein
L3_098_000M1_scaffold_271_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27687..28469
DNA (783bp) protein (261aa)
ABC transporter, ATP-binding protein (EC:3.6.3.27)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27676.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_098_000M1_scaffold_271_25
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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28463..29242
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27677.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_098_000M1_scaffold_271_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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29266..30921
DNA (1656bp) protein (552aa)
Nickel ABC transporter, nickel/metallophore periplasmic binding protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ82_9FIRM
Nickel ABC transporter, nickel/metallophore periplasmic binding protein {ECO:0000313|EMBL:EHO27678.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
nikA; ABC-type dipeptide transport system, periplasmic component
L3_098_000M1_scaffold_271_27
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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30991..31353
DNA (363bp) protein (121aa)
iron-dependent transcriptional regulator n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B2FF40
Uncharacterized protein {ECO:0000313|EMBL:CDB03090.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Mn-dependent transcriptional regulator
L3_098_000M1_scaffold_271_28
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31359..31760
DNA (402bp) protein (134aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUN6_9CLOT
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDO60686.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
two component transcriptional regulator, winged helix family
L3_098_000M1_scaffold_271_29
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31856..33607)
DNA (1752bp) protein (584aa)
Peptidase M23 family n=2 Tax=root RepID=R6QMS6_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDC37918.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_098_000M1_scaffold_271_30
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34195..36543)
DNA (2349bp) protein (783aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUN4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60684.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Domain of unknown function DUF87.
Displaying items 1-30 of 45 in total

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