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L3_098_000M1_scaffold_381

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_381_1
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..446)
DNA (444bp) protein (148aa)
Beta-xylosidase (EC:3.2.1.37)
Beta-xylosidase n=2 Tax=Roseburia RepID=D4KXA2_9FIRM
Beta-xylosidase {ECO:0000313|EMBL:EXG85673.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L3_098_000M1_scaffold_381_2
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(409..1962)
DNA (1554bp) protein (518aa)
arfA; xylosidase/arabinosidase ArfA (EC:3.2.1.37 3.2.1.55)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PJ75_9CLOT
Beta-xylosidase {ECO:0000313|EMBL:EXG85672.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L3_098_000M1_scaffold_381_3
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1985..2824)
DNA (840bp) protein (280aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EWJ2_9FIRM
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:EXG85671.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_098_000M1_scaffold_381_4
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2839..3792)
DNA (954bp) protein (318aa)
ABC-type polysaccharide transport system permease component n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EVJ4_9FIRM
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EXG85670.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC-type polysaccharide transport system, permease component
L3_098_000M1_scaffold_381_5
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3819..5384)
DNA (1566bp) protein (522aa)
ABC-type sugar transport system, periplasmic component n=3 Tax=Roseburia RepID=D4KX96_9FIRM
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EXG85669.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC-type sugar transport system, periplasmic component
L3_098_000M1_scaffold_381_6
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5674..7896
DNA (2223bp) protein (741aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KNH8_CLOPH
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:EXG85668.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
AraC family transcriptional regulator
L3_098_000M1_scaffold_381_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7891..9174)
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J3B2_9CLOT
L3_098_000M1_scaffold_381_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9208..9663)
DNA (456bp) protein (152aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8RV18_9CLOT
Stage V sporulation protein AC {ECO:0000313|EMBL:ENZ32916.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
SpoVA protein
L3_098_000M1_scaffold_381_9
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9681..10118)
DNA (438bp) protein (146aa)
Stage V sporulation protein AB n=9 Tax=Clostridium RepID=N9VL61_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25248.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
hypothetical protein
L3_098_000M1_scaffold_381_10
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10105..10731)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6K018_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63426.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
stage V sporulation protein AA
L3_098_000M1_scaffold_381_11
unknown

Not on your lists

comp(10734..10889)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_098_000M1_scaffold_381_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11004..11732)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EU84_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_098_000M1_scaffold_381_13
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11738..12172)
DNA (435bp) protein (145aa)
anti-sigma F factor (EC:2.7.11.1)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J023_9CLOT
Anti-sigma F factor {ECO:0000313|EMBL:CDF25244.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_098_000M1_scaffold_381_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12189..12536)
DNA (348bp) protein (116aa)
Anti-sigma factor antagonist n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJM3_9CLOT
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
anti-anti-sigma factor
L3_098_000M1_scaffold_381_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12642..13946)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42360.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13946..14092)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J028_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42361.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14089..15426)
DNA (1338bp) protein (446aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42363.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_098_000M1_scaffold_381_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15528..16124)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98711.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_098_000M1_scaffold_381_19
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16121..16417)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98712.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_098_000M1_scaffold_381_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16502..19144)
DNA (2643bp) protein (881aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J069_9CLOT
L3_098_000M1_scaffold_381_21
unknown

Not on your lists

comp(19119..19220)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_098_000M1_scaffold_381_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19512..20324)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQ36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42369.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_23
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20321..21544)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42370.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21561..25139)
DNA (3579bp) protein (1193aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J038_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42371.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25307..25825
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42378.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_098_000M1_scaffold_381_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25960..26415
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z895_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44518.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Uncharacterized protein conserved in cyanobacteria
L3_098_000M1_scaffold_381_27
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26463..27059)
DNA (597bp) protein (199aa)
Probable GTP-binding protein EngB n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IDC5_9CLOT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L3_098_000M1_scaffold_381_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27056..29371)
DNA (2316bp) protein (772aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Clostridium sp. CAG:7 RepID=R5IJV3_9CLOT
L3_098_000M1_scaffold_381_29
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29476..30786)
DNA (1311bp) protein (437aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:7 RepID=R5J081_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
L3_098_000M1_scaffold_381_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30821..31402)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQ50_9CLOT
Displaying items 1-30 of 38 in total

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