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L3_098_000M1_scaffold_393

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_393_1
unknown

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436..1581
DNA (1146bp) protein (382aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=2 Tax=Clostridiales RepID=D4N1I4_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CBL38729.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_098_000M1_scaffold_393_2
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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1841..3136
DNA (1296bp) protein (432aa)
MATE efflux family protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z2B9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDA33145.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
putative efflux protein, MATE family
L3_098_000M1_scaffold_393_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3221..4249
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=4 Tax=Clostridiales RepID=B0NZU0_9CLOT
L3_098_000M1_scaffold_393_4
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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4362..5390
DNA (1029bp) protein (343aa)
Oxidoreductase n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YXM7_9FIRM
Oxidoreductase {ECO:0000313|EMBL:CDA31580.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Predicted dehydrogenases and related proteins
L3_098_000M1_scaffold_393_5
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5414..6631
DNA (1218bp) protein (406aa)
Flavoprotein family protein n=2 Tax=Clostridiales RepID=B0NZT7_9CLOT
conserved hypothetical protein TIGR00275
Flavoprotein family protein {ECO:0000313|EMBL:EDS22217.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_098_000M1_scaffold_393_6
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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6664..7326
DNA (663bp) protein (221aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Cytidylate kinase n=5 Tax=Clostridiales RepID=D4MX13_9FIRM
L3_098_000M1_scaffold_393_7
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7360..9258
DNA (1899bp) protein (633aa)
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) n=3 Tax=Clostridiales RepID=D4MX14_9FIRM
L3_098_000M1_scaffold_393_8
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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9400..12861
DNA (3462bp) protein (1154aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
pyruvate carboxylase (EC:6.4.1.1)
Pyruvate carboxylase n=4 Tax=Clostridiales RepID=D4MX15_9FIRM
L3_098_000M1_scaffold_393_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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12991..13641
DNA (651bp) protein (217aa)
Protease subunit of ATP-dependent Clp proteases n=5 Tax=Clostridiales RepID=D4MX16_9FIRM
Protease subunit of ATP-dependent Clp proteases
ATP-dependent Clp protease proteolytic subunit {ECO:0000313|EMBL:CDA31575.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_10
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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13764..15251
DNA (1488bp) protein (496aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
4Fe-4S binding domain-containing protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z4I3_9FIRM
4Fe-4S binding domain-containing protein {ECO:0000313|EMBL:CDA31574.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_11
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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15360..17798
DNA (2439bp) protein (813aa)
Putative stage III sporulation protein E n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QBQ4_9FIRM
Putative stage III sporulation protein E {ECO:0000313|EMBL:EKY25366.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
DNA translocase FtsK
L3_098_000M1_scaffold_393_12
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17812..19485
DNA (1674bp) protein (558aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=3 Tax=Lachnospiraceae RepID=L1QCH2_9FIRM
L3_098_000M1_scaffold_393_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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19537..20382
DNA (846bp) protein (282aa)
5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZBU0_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_14
unknown

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20388..21734
DNA (1347bp) protein (449aa)
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Ribosomal protein S12 methylthiotransferase RimO n=4 Tax=Clostridiales RepID=D4MX20_9FIRM
L3_098_000M1_scaffold_393_15
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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21718..22260
DNA (543bp) protein (181aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=5 Tax=Clostridiales RepID=D4MX21_9FIRM
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDA31569.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_16
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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22282..23529
DNA (1248bp) protein (416aa)
Putative competence-damage inducible protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C2J6_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
L3_098_000M1_scaffold_393_17
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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23685..24740
DNA (1056bp) protein (352aa)
Protein RecA n=2 Tax=Lachnospiraceae RepID=L1QCG9_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
protein RecA
L3_098_000M1_scaffold_393_18
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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24740..25342
DNA (603bp) protein (201aa)
Regulatory protein RecX n=4 Tax=Clostridiales RepID=D4MX25_9FIRM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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25514..26107
DNA (594bp) protein (198aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0NZS3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKY25358.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_098_000M1_scaffold_393_20
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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26314..26973
DNA (660bp) protein (220aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=5 Tax=Clostridiales RepID=D4MX27_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulator receiver domain-containing protein {ECO:0000313|EMBL:CDA31564.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_21
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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26970..28397
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridiales RepID=L1QBP5_9FIRM
Signal transduction histidine kinase
L3_098_000M1_scaffold_393_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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28381..29202
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R5ZRK4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA31562.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_23
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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29157..30518
DNA (1362bp) protein (454aa)
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control n=4 Tax=Clostridiales RepID=D4MX29_9FIRM
Rhodanese-like protein {ECO:0000313|EMBL:CDA31561.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L3_098_000M1_scaffold_393_24
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30581..32209)
DNA (1629bp) protein (543aa)
ABC transporter n=2 Tax=Lachnospiraceae RepID=E5VIE8_9FIRM
ABC transporter {ECO:0000313|EMBL:CDA31560.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_098_000M1_scaffold_393_25
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32383..32736
DNA (354bp) protein (118aa)
UPF0122 protein CL2_00550 n=5 Tax=Clostridiales RepID=D4MX31_9FIRM
hypothetical protein
UPF0122 protein CLOSS21_01185 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_098_000M1_scaffold_393_26
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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32755..34095
DNA (1341bp) protein (447aa)
Signal recognition particle protein n=5 Tax=Clostridiales RepID=D4MX32_9FIRM
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_098_000M1_scaffold_393_27
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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34162..34407
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=5 Tax=Clostridiales RepID=D4MX33_9FIRM
SSU ribosomal protein S16P
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_098_000M1_scaffold_393_28
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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34433..34660
DNA (228bp) protein (76aa)
UPF0109 protein CL2_00580 n=5 Tax=Clostridiales RepID=D4MX34_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein BN562_01146 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000M1_scaffold_393_29
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34788..35258)
DNA (471bp) protein (157aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B0NZS0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKY25348.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_098_000M1_scaffold_393_30
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35303..36571)
DNA (1269bp) protein (423aa)
Possible tyrosine transporter P-protein (TC 2.A.45.2.1) n=5 Tax=Clostridiales RepID=D4MX36_9FIRM
possible tyrosine transporter P-protein (TC 2.A.45.2.1)
Citrate transporter {ECO:0000313|EMBL:EFV17349.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Displaying items 1-30 of 32 in total

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