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L3_098_000M1_scaffold_439

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_439_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(141..659)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD19_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75982.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_2
unknown

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730..861
DNA (132bp) protein (44aa)

This feature has no annotations

L3_098_000M1_scaffold_439_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

919..1698
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=3 Tax=Eubacterium RepID=D4JP43_9FIRM
RNA polymerase, sigma subunit, RpsG/SigG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_098_000M1_scaffold_439_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1715..2257)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD16_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75979.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_5
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2280..3227)
DNA (948bp) protein (316aa)
LysR family transcriptional regulator hydrogen peroxide-inducible genes activator n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZQ73_9FIRM
LysR family transcriptional regulator hydrogen peroxide-inducible genes activator {ECO:0000313|EMBL:CDA38679.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
LysR family transcriptional regulator
L3_098_000M1_scaffold_439_6
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3502..4935
DNA (1434bp) protein (478aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=C4Z6M1_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73613.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_098_000M1_scaffold_439_7
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4975..6177
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KEX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB68571.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_098_000M1_scaffold_439_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6281..8074
DNA (1794bp) protein (598aa)
Arginine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000255|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00123}; Short=ArgRS {ECO:0000255|HAMAP-Rule:MF_00123};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Arginine--tRNA ligase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=SYR_EUBR3
argS; arginyl-tRNA synthetase
L3_098_000M1_scaffold_439_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8203..9102
DNA (900bp) protein (300aa)
Stage III sporulation protein AA n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD13_EUBR3
stage III sporulation protein AA
Stage III sporulation protein AA {ECO:0000313|EMBL:ACR75976.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9044..9559
DNA (516bp) protein (172aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6TFC3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK90848.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_098_000M1_scaffold_439_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9624..9821
DNA (198bp) protein (66aa)
Stage III sporulation protein AC n=4 Tax=Eubacterium RepID=D4JP48_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75974.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9823..10200
DNA (378bp) protein (126aa)
Stage III sporulation protein AC/AD protein family n=3 Tax=Eubacterium RepID=D4JP49_9FIRM
Stage III sporulation protein AC/AD protein family.
Stage III sporulation protein AC/AD protein family {ECO:0000313|EMBL:CBK90846.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_098_000M1_scaffold_439_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10242..11345
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD09_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75972.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11352..11603
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD08_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75971.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_15
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11545..12093
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UMU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72107.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_098_000M1_scaffold_439_16
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12096..12722
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TIN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72105.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_098_000M1_scaffold_439_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12801..13331
DNA (531bp) protein (177aa)
Peptide chain release factor 3 n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD05_EUBR3
peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_18
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13292..14347
DNA (1056bp) protein (352aa)
Peptide chain release factor 3 n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TFA9_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
peptide chain release factor 3
L3_098_000M1_scaffold_439_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14627..15679
DNA (1053bp) protein (351aa)
Protein RecA n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD04_EUBR3
RecA protein
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15699..16307
DNA (609bp) protein (203aa)
Regulatory protein RecX n=3 Tax=Eubacterium RepID=D4JP52_9FIRM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_098_000M1_scaffold_439_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16390..17937
DNA (1548bp) protein (516aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Ribonuclease Y n=2 Tax=Eubacterium RepID=D6E602_9FIRM
conserved hypothetical protein YmdA/YtgF
L3_098_000M1_scaffold_439_22
unknown

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18238..18360
DNA (123bp) protein (41aa)

This feature has no annotations

L3_098_000M1_scaffold_439_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18308..19525
DNA (1218bp) protein (406aa)
NADPH-dependent butanol dehydrogenase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZD01_EUBR3
NADPH-dependent butanol dehydrogenase
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:ACR75964.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19575..20114
DNA (540bp) protein (180aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:CBK90840.1}; EC=3.6.1.13 {ECO:0000313|EMBL:CBK90840.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
NTP pyrophosphohydrolases including oxidative damage repair enzymes n=3 Tax=Eubacterium RepID=D4JP55_9FIRM
L3_098_000M1_scaffold_439_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20198..21229)
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361, ECO:0000313|EMBL:CBK94875.1};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=4 Tax=Eubacterium RepID=C4ZCZ9_EUBR3
phospho-2-dehydro-3-deoxyheptonate aldolase
L3_098_000M1_scaffold_439_26
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21593..22765
DNA (1173bp) protein (391aa)
Bacterial SH3 domain n=4 Tax=Eubacterium RepID=D4JP57_9FIRM
Bacterial SH3 domain.
Uncharacterized protein {ECO:0000313|EMBL:ACR75960.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_098_000M1_scaffold_439_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22931..23749
DNA (819bp) protein (273aa)
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Pseudouridine synthase n=4 Tax=Eubacterium RepID=C4ZCZ6_EUBR3
L3_098_000M1_scaffold_439_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23773..25743
DNA (1971bp) protein (657aa)
NAD-dependent DNA ligase (contains BRCT domain type II) (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000313|EMBL:CBK94878.1};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
DNA ligase n=3 Tax=Eubacterium RepID=D4JP59_9FIRM
L3_098_000M1_scaffold_439_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25759..25890
DNA (132bp) protein (44aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Homoserine O-succinyltransferase n=4 Tax=Eubacterium RepID=META_EUBR3
homoserine O-succinyltransferase
L3_098_000M1_scaffold_439_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25851..26621
DNA (771bp) protein (257aa)
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00295}; EC=2.3.1.46 {ECO:0000255|HAMAP-Rule:MF_00295};; Homoserine O-transsuccinylase {ECO:0000255|HAMAP-Rule:MF_00295}; Short=HTS {ECO:0000255|HAMAP-Rule:MF_00295};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Homoserine O-succinyltransferase n=4 Tax=Eubacterium RepID=META_EUBR3
Displaying items 1-30 of 62 in total

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