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L3_098_000M1_scaffold_453

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_453_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..283)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76065.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
uncharacterized domain HDIG
L3_098_000M1_scaffold_453_2
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(308..1684)
DNA (1377bp) protein (459aa)
PhoH family protein n=1 Tax=Blautia sp. KLE 1732 RepID=U2D0K4_9FIRM
PhoH family protein {ECO:0000313|EMBL:ERI89853.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Predicted ATPase related to phosphate starvation-inducible protein PhoH
L3_098_000M1_scaffold_453_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2083..2712
DNA (630bp) protein (210aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CMD5_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase, sigma 27/28 subunit, RpsK/SigK
L3_098_000M1_scaffold_453_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2751..3974)
DNA (1224bp) protein (408aa)
Collagenase and related proteases (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76062.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3980..4624)
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76061.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
O-methyltransferase
L3_098_000M1_scaffold_453_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4621..5025)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78540.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted periplasmic solute-binding protein
L3_098_000M1_scaffold_453_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5115..5459)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78539.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Protein of unknown function (DUF964).
L3_098_000M1_scaffold_453_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5461..7356)
DNA (1896bp) protein (632aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76058.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L3_098_000M1_scaffold_453_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7373..7630)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76057.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Protein of unknown function (DUF1292).
L3_098_000M1_scaffold_453_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7643..8065)
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Putative Holliday junction resolvase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG77_9FIRM
conserved hypothetical protein TIGR00250
L3_098_000M1_scaffold_453_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8067..8339)
DNA (273bp) protein (91aa)
UPF0297 protein RSAG_02943 n=2 Tax=Ruminococcus RepID=C6JG76_9FIRM
UPF0297 protein BN806_02133 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_098_000M1_scaffold_453_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8553..9884)
DNA (1332bp) protein (444aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
MiaB-like tRNA modifying enzyme n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG75_9FIRM
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EES76054.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10202..10438
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76053.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Phosphotransferase system, HPr-related proteins
L3_098_000M1_scaffold_453_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10554..11735)
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Probable tRNA sulfurtransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG73_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L3_098_000M1_scaffold_453_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11921..13075)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76051.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13097..13843)
DNA (747bp) protein (249aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG71_9FIRM
L3_098_000M1_scaffold_453_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13848..14801)
DNA (954bp) protein (318aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CL88_9FIRM
L3_098_000M1_scaffold_453_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14919..15632)
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76048.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
PAP2 superfamily.
L3_098_000M1_scaffold_453_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15764..16948)
DNA (1185bp) protein (395aa)
Chaperone protein DnaJ n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CL83_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
chaperone protein DnaJ
L3_098_000M1_scaffold_453_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17068..18945)
DNA (1878bp) protein (626aa)
Chaperone protein DnaK n=2 Tax=Ruminococcus RepID=C6JG67_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
chaperone protein DnaK
L3_098_000M1_scaffold_453_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19006..19650)
DNA (645bp) protein (215aa)
Protein GrpE n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CM99_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Molecular chaperone GrpE (heat shock protein)
L3_098_000M1_scaffold_453_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19668..20708)
DNA (1041bp) protein (347aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG65_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
heat-inducible transcription repressor HrcA
L3_098_000M1_scaffold_453_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21356..23344)
DNA (1989bp) protein (663aa)
excinuclease ABC subunit B n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E0EB60
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
excinuclease ABC, B subunit
L3_098_000M1_scaffold_453_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23635..26415)
DNA (2781bp) protein (927aa)
amino acid-binding domain sensor hybrid histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76042.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27043..27675)
DNA (633bp) protein (211aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.32)
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG62_9FIRM
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:EES76041.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27691..28596)
DNA (906bp) protein (302aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.32)
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG61_9FIRM
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:EES76040.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_453_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28742..30007)
DNA (1266bp) protein (422aa)
Divalent anion:Na+ symporter (DASS) family transporter n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG60_9FIRM
Divalent anion:Na+ symporter (DASS) family transporter {ECO:0000313|EMBL:EES76039.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Di-and tricarboxylate transporters
L3_098_000M1_scaffold_453_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30393..31295
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76038.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transcriptional regulator
L3_098_000M1_scaffold_453_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31297..31707
DNA (411bp) protein (137aa)
Outer membrane protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Q1_9FIRM
Outer membrane protein {ECO:0000313|EMBL:EES78194.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Listeria/Bacterioides repeat
L3_098_000M1_scaffold_453_30
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

32010..32327
DNA (318bp) protein (106aa)
PadR family transcriptional regulator n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D6D0E9
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDA14999.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
transcriptional regulator, PadR family
Displaying items 1-30 of 33 in total

View Taxonomy