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L3_098_000M1_scaffold_530

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_530_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..2079
DNA (2079bp) protein (693aa)
levR2; transcriptional regulatory protein LevR (EC:2.7.1.-)
Sigma-54 interaction domain protein n=2 Tax=Ruminococcus gnavus RepID=A7B1W7_RUMGN
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EDN78239.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_098_000M1_scaffold_530_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2095..3423
DNA (1329bp) protein (443aa)
RNA polymerase sigma-54 factor n=3 Tax=Lachnospiraceae RepID=A7B1W8_RUMGN
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EGN46543.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNA polymerase sigma-54 factor
L3_098_000M1_scaffold_530_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3834..4238
DNA (405bp) protein (135aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1X0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46542.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Transposase and inactivated derivatives
L3_098_000M1_scaffold_530_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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4198..4395
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BX74_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46541.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_098_000M1_scaffold_530_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4376..4765
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BY40_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46540.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transposase TRm2011
L3_098_000M1_scaffold_530_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5115..5660
DNA (546bp) protein (182aa)
BioY family protein n=2 Tax=Clostridiales RepID=A7B1X3_RUMGN
BioY family protein {ECO:0000313|EMBL:CCZ68292.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_098_000M1_scaffold_530_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5730..6161
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1X4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46538.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_098_000M1_scaffold_530_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6282..7376
DNA (1095bp) protein (365aa)
DNA-binding helix-turn-helix protein n=3 Tax=Lachnospiraceae RepID=A7B1X5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46537.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
XRE family transcriptional regulator
L3_098_000M1_scaffold_530_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7427..8476)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78248.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_098_000M1_scaffold_530_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8502..8846)
DNA (345bp) protein (115aa)
Hydrogenase nickel insertion protein HypA n=3 Tax=Lachnospiraceae RepID=V8BY34_RUMGN
Hydrogenase nickel insertion protein HypA {ECO:0000313|EMBL:ETD19401.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hydrogenase nickel incorporation protein HypA
L3_098_000M1_scaffold_530_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8858..10684)
DNA (1827bp) protein (609aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X8_RUMGN
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDN78250.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
NADPH-dependent glutamate synthase GltA2
L3_098_000M1_scaffold_530_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10630..11553)
DNA (924bp) protein (308aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X8_RUMGN
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDN78250.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
NADPH-dependent glutamate synthase GltA2
L3_098_000M1_scaffold_530_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11550..12167)
DNA (618bp) protein (206aa)
Hydrogenase accessory protein HypB n=2 Tax=Lachnospiraceae RepID=V8BWA0_RUMGN
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:ETD19399.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hydrogenase accessory protein HypB
L3_098_000M1_scaffold_530_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12395..13999)
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1Y0_RUMGN
L3_098_000M1_scaffold_530_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14378..14527
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1Y2_RUMGN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
50S ribosomal protein L33
L3_098_000M1_scaffold_530_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14549..14758
DNA (210bp) protein (70aa)
Protein translocase subunit SecE n=2 Tax=Clostridiales RepID=A7B1Y3_RUMGN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
protein translocase subunit secE/sec61 gamma
L3_098_000M1_scaffold_530_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14785..15303
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=4 Tax=Clostridiales RepID=A7B1Y4_RUMGN
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcription antitermination protein nusG
L3_098_000M1_scaffold_530_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15357..15782
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=3 Tax=Clostridiales RepID=A7B1Y5_RUMGN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LSU ribosomal protein L11P
L3_098_000M1_scaffold_530_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15941..16633
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=4 Tax=Clostridiales RepID=A7B1Y6_RUMGN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ribosomal protein L1, bacterial/chloroplast
L3_098_000M1_scaffold_530_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16840..17385
DNA (546bp) protein (182aa)
50S ribosomal protein L10 n=4 Tax=Clostridiales RepID=A7B1Y7_RUMGN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rplJ; 50S ribosomal protein L10
L3_098_000M1_scaffold_530_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17495..17872
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RWY1_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L12P
L3_098_000M1_scaffold_530_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18153..22010
DNA (3858bp) protein (1286aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridiales RepID=R5UAW2_9FIRM
L3_098_000M1_scaffold_530_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22025..25690
DNA (3666bp) protein (1222aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Lachnospiraceae RepID=F7JYK6_9FIRM
L3_098_000M1_scaffold_530_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25857..26522
DNA (666bp) protein (222aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TR83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19389.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted membrane protein
L3_098_000M1_scaffold_530_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26875..27588)
DNA (714bp) protein (238aa)
Response regulator receiver domain protein n=4 Tax=Clostridiales RepID=A7B1Z5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46800.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
winged helix family two component transcriptional regulator
L3_098_000M1_scaffold_530_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27581..28651)
DNA (1071bp) protein (357aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Lachnospiraceae RepID=A7B1Z6_RUMGN
L3_098_000M1_scaffold_530_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29038..30933
DNA (1896bp) protein (632aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
vacuolar-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
V-type H(+)-translocating pyrophosphatase n=3 Tax=Lachnospiraceae RepID=V8BX83_RUMGN
L3_098_000M1_scaffold_530_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31215..32399)
DNA (1185bp) protein (395aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=4 Tax=Clostridiales RepID=A7B1Z8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46797.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_098_000M1_scaffold_530_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32399..33397)
DNA (999bp) protein (333aa)
DNA replication protein DnaC n=4 Tax=Clostridiales RepID=A7B1Z9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19383.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
replicative DNA helicase loader DnaI
L3_098_000M1_scaffold_530_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33413..34477)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BX47_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19382.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DnaD and phage-associated domain
Displaying items 1-30 of 50 in total

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