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L3_098_000M1_scaffold_538

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_538_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(124..261)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LYP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98781.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_538_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(261..695)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77293.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_098_000M1_scaffold_538_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(737..1102)
DNA (366bp) protein (122aa)
Putative fluoride ion transporter CrcB n=2 Tax=Ruminococcus RepID=C6JC00_9FIRM
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
CrcB protein
L3_098_000M1_scaffold_538_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1173..1634)
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77295.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
mutator MutT (7,8-dihydro-8-oxoguanine-triphosphatase)
L3_098_000M1_scaffold_538_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1719..2384)
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77296.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted membrane protein
L3_098_000M1_scaffold_538_6
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2822..4093)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A3L2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ20665.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_098_000M1_scaffold_538_7
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4059..4814)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A8K3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ20664.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
ABC transporter
L3_098_000M1_scaffold_538_8
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4928..5539)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A2F0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ20663.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Predicted transcriptional regulators
L3_098_000M1_scaffold_538_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5714..5812
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LLT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM99413.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_098_000M1_scaffold_538_10
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5939..6880)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000306C832
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG91266.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Predicted transcriptional regulators
L3_098_000M1_scaffold_538_11
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7031..7345)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031DD469
Uncharacterized protein {ECO:0000313|EMBL:EEG91436.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L3_098_000M1_scaffold_538_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7383..7574)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77299.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_098_000M1_scaffold_538_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7624..7989)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77300.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_098_000M1_scaffold_538_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8045..8425)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000362C516
Uncharacterized protein {ECO:0000313|EMBL:EES77301.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_538_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8533..8952)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77302.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_098_000M1_scaffold_538_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9003..10196)
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
elongation factor Tu n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D36E4A
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_538_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10470..12590)
DNA (2121bp) protein (707aa)
elongation factor P n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F483C7
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
elongation factor G
L3_098_000M1_scaffold_538_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12608..13078)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=3 Tax=root RepID=C6JC24_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
30S ribosomal protein S7
L3_098_000M1_scaffold_538_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13303..13719)
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC25_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
SSU ribosomal protein S12P
L3_098_000M1_scaffold_538_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14502..15515
DNA (1014bp) protein (338aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77320.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_098_000M1_scaffold_538_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15632..16732
DNA (1101bp) protein (367aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77361.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_098_000M1_scaffold_538_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16985..18214)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77364.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_098_000M1_scaffold_538_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18228..19046)
DNA (819bp) protein (273aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC30_9FIRM
Serine/threonine phosphatase {ECO:0000313|EMBL:CDD77366.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_098_000M1_scaffold_538_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19027..20934)
DNA (1908bp) protein (636aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JC31_9FIRM
Mitogen-activated protein kinase kinase 2 {ECO:0000313|EMBL:CDD77368.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Serine/threonine protein kinase
L3_098_000M1_scaffold_538_25
unknown

Not on your lists

comp(21028..21183)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_098_000M1_scaffold_538_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21244..24999)
DNA (3756bp) protein (1252aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC32_9FIRM
L3_098_000M1_scaffold_538_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25017..28877)
DNA (3861bp) protein (1287aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Ruminococcus RepID=C6JC33_9FIRM
L3_098_000M1_scaffold_538_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29087..31177)
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77374.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_098_000M1_scaffold_538_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31265..31636)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Ruminococcus RepID=C6JC35_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
LSU ribosomal protein L12P
L3_098_000M1_scaffold_538_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31747..32250)
DNA (504bp) protein (168aa)
50S ribosomal protein L10 n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH62_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LSU ribosomal protein L10P
Displaying items 1-30 of 33 in total

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