ggKbase home page

L3_098_000M1_scaffold_584

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000M1_scaffold_584_1
unknown

Not on your lists

2..115
DNA (114bp) protein (38aa)

This feature has no annotations

L3_098_000M1_scaffold_584_2
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

178..351
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3ACX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79668.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
Excisionase from transposon Tn916.
L3_098_000M1_scaffold_584_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

489..1631
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BXD8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19151.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Site-specific recombinase XerD
L3_098_000M1_scaffold_584_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1721..2401
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=3 Tax=Lachnospiraceae RepID=A7B4S8_RUMGN
L3_098_000M1_scaffold_584_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2419..2568
DNA (150bp) protein (50aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B4S7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47854.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_098_000M1_scaffold_584_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2591..3076
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BVF1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19148.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Glycopeptide antibiotics resistance protein
L3_098_000M1_scaffold_584_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3039..3395
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Ruminococcus gnavus RepID=V8BWF5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19147.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_098_000M1_scaffold_584_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3396..4694
DNA (1299bp) protein (433aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B4S4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68175.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Leucyl aminopeptidase (aminopeptidase T)
L3_098_000M1_scaffold_584_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4733..5242
DNA (510bp) protein (170aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=4 Tax=Clostridiales RepID=A7B4S3_RUMGN
L3_098_000M1_scaffold_584_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5275..6300
DNA (1026bp) protein (342aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=4 Tax=Clostridiales RepID=A7B4S2_RUMGN
L3_098_000M1_scaffold_584_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6294..6920
DNA (627bp) protein (209aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=4 Tax=Clostridiales RepID=A7B4S1_RUMGN
L3_098_000M1_scaffold_584_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6935..8206
DNA (1272bp) protein (424aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=4 Tax=Clostridiales RepID=A7B4S0_RUMGN
L3_098_000M1_scaffold_584_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8442..9617
DNA (1176bp) protein (392aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
deoB; putative phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=4 Tax=Clostridiales RepID=A7B4R9_RUMGN
L3_098_000M1_scaffold_584_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9640..11172
DNA (1533bp) protein (511aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BWI0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19140.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC transporter ATP-binding protein
L3_098_000M1_scaffold_584_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11162..12292
DNA (1131bp) protein (377aa)
Branched-chain amino acid ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B4R7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19139.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC transporter permease
L3_098_000M1_scaffold_584_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12289..13242
DNA (954bp) protein (318aa)
Branched-chain amino acid ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B4R6_RUMGN
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDN76939.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ABC transporter permease
L3_098_000M1_scaffold_584_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13267..14589
DNA (1323bp) protein (441aa)
pyn; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=3 Tax=Lachnospiraceae RepID=A7B4R5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47843.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_098_000M1_scaffold_584_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14611..15276
DNA (666bp) protein (222aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
deoC; deoxyribose-phosphate aldolase DeoC (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=3 Tax=Lachnospiraceae RepID=A7B4R4_RUMGN
L3_098_000M1_scaffold_584_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15289..16404
DNA (1116bp) protein (372aa)
Basic membrane protein n=3 Tax=Lachnospiraceae RepID=A7B4R3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47841.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
membrane lipoprotein TmpC
L3_098_000M1_scaffold_584_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16549..17310
DNA (762bp) protein (254aa)
Transcriptional regulator, Crp/Fnr family n=3 Tax=Lachnospiraceae RepID=A7B4R2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47840.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
cyclic nucleotide-binding domain-containing protein
L3_098_000M1_scaffold_584_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17294..18130
DNA (837bp) protein (279aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Purine nucleoside phosphorylase n=2 Tax=Lachnospiraceae RepID=F7JXH6_9FIRM
purine nucleoside phosphorylase I
L3_098_000M1_scaffold_584_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18160..18621
DNA (462bp) protein (154aa)
Cytidine deaminase n=3 Tax=Lachnospiraceae RepID=A7B4R0_RUMGN
Cytidine deaminase {ECO:0000313|EMBL:EGN47838.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
cytidine deaminase
L3_098_000M1_scaffold_584_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18630..19598
DNA (969bp) protein (323aa)
adenosine deaminase (EC:3.5.4.4)
Adenosine deaminase n=3 Tax=Lachnospiraceae RepID=A7B4Q9_RUMGN
Adenosine deaminase {ECO:0000313|EMBL:ETD19131.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_098_000M1_scaffold_584_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19861..20964
DNA (1104bp) protein (368aa)
L-ascorbate 6-phosphate lactonase (EC:3.1.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4Q8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76931.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_098_000M1_scaffold_584_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20983..21441
DNA (459bp) protein (153aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=3 Tax=Lachnospiraceae RepID=A7B4Q7_RUMGN
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EDN76930.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
L3_098_000M1_scaffold_584_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21499..22998
DNA (1500bp) protein (500aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BVD3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47834.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
protein UlaA
L3_098_000M1_scaffold_584_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23067..23369
DNA (303bp) protein (101aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BWD9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47833.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS system lactose/cellobiose-specific transporter subunit IIB
L3_098_000M1_scaffold_584_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23410..24186
DNA (777bp) protein (259aa)
Transcriptional regulator, DeoR family n=3 Tax=Lachnospiraceae RepID=A7B4Q4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47832.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
yulB; HTH-type transcriptional regulator YulB
L3_098_000M1_scaffold_584_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24183..25028
DNA (846bp) protein (282aa)
Hexulose-6-phosphate isomerase n=2 Tax=Lachnospiraceae RepID=F7JX60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD19125.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
xylose isomerase-like TIM barrel family protein
L3_098_000M1_scaffold_584_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25028..26098
DNA (1071bp) protein (357aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B4Q2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76925.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
Displaying items 1-30 of 34 in total

View Taxonomy