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L3_098_023G1_scaffold_3

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Displaying items 1-30 of 266 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_023G1_scaffold_3_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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808..1647
DNA (840bp) protein (280aa)
PHP domain protein {ECO:0000313|EMBL:EJF40450.1}; EC=3.1.3.- {ECO:0000313|EMBL:EJF40450.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
PHP domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H4I0_9CLOT
Predicted metal-dependent phosphoesterases (PHP family)
L3_098_023G1_scaffold_3_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1665..1928
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035D5BF0
TIGR03905 family protein {ECO:0000313|EMBL:EJF40551.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
TSCPD domain protein
L3_098_023G1_scaffold_3_3
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1963..2376)
DNA (414bp) protein (138aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRR7_9CLOT
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:EDO61747.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
thioesterase superfamily protein
L3_098_023G1_scaffold_3_4
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2373..4112)
DNA (1740bp) protein (580aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
ABC transporter transmembrane region n=5 Tax=Pelosinus fermentans RepID=I8REV8_9FIRM
ABC transporter transmembrane region {ECO:0000313|EMBL:EIW19454.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
L3_098_023G1_scaffold_3_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4234..4761)
DNA (528bp) protein (176aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=445337 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C str. Eklund.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B8A5_CLOBO
peptidyl-prolyl cis-trans isomerase
L3_098_023G1_scaffold_3_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5220..5996
DNA (777bp) protein (259aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJF42663.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EJF42663.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
exodeoxyribonuclease III n=1 Tax=Clostridium sporosphaeroides RepID=UPI000372D017
exodeoxyribonuclease III
L3_098_023G1_scaffold_3_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6027..7952
DNA (1926bp) protein (642aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
fructose-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Clostridium sp. MSTE9 RepID=J0X234_9CLOT
L3_098_023G1_scaffold_3_8
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8389..9165
DNA (777bp) protein (259aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Thymidylate synthase ThyX n=2 Tax=Clostridium RepID=R6P5L5_9CLOT
thymidylate synthase, flavin-dependent
L3_098_023G1_scaffold_3_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9162..9821
DNA (660bp) protein (220aa)
dTMP kinase {ECO:0000313|EMBL:EJF41669.1}; EC=2.7.4.9 {ECO:0000313|EMBL:EJF41669.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
thymidylate kinase (EC:2.7.4.9)
thymidylate kinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003717FE4
L3_098_023G1_scaffold_3_10
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9848..10393
DNA (546bp) protein (182aa)
DJ-1 family protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C371E7
DJ-1 family protein {ECO:0000313|EMBL:CDD54152.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
DJ-1 family protein
L3_098_023G1_scaffold_3_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10384..10989
DNA (606bp) protein (202aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Clostridium RepID=A7VTJ4_9CLOT
L3_098_023G1_scaffold_3_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11002..12387
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000373167A
YceG family protein {ECO:0000313|EMBL:EJF41679.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Predicted periplasmic solute-binding protein
L3_098_023G1_scaffold_3_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12403..13635
DNA (1233bp) protein (411aa)
Peptidase, U32 family {ECO:0000313|EMBL:EJF41668.1}; EC=3.4.-.- {ECO:0000313|EMBL:EJF41668.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Collagenase and related proteases (EC:3.4.-.-)
peptidase U32 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361E541
L3_098_023G1_scaffold_3_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13717..14373
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32633.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L3_098_023G1_scaffold_3_15
unknown

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14653..15261
DNA (609bp) protein (203aa)

This feature has no annotations

L3_098_023G1_scaffold_3_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15698..18331
DNA (2634bp) protein (878aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368641D
L3_098_023G1_scaffold_3_17
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18355..18693
DNA (339bp) protein (113aa)
HIT family hydrolase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000380E2D3
Histidine triad domain protein {ECO:0000313|EMBL:CDC05245.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
HIT family hydrolase, diadenosine tetraphosphate hydrolase
L3_098_023G1_scaffold_3_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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18742..19281
DNA (540bp) protein (180aa)
Phosphoribosyl transferase domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZJP3_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:CDD30672.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
phosphoribosyltransferase
L3_098_023G1_scaffold_3_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19360..21612
DNA (2253bp) protein (751aa)
Competence protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WYA3_9CLOT
Competence protein {ECO:0000313|EMBL:EJF41296.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative membrane protein
L3_098_023G1_scaffold_3_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21605..22651
DNA (1047bp) protein (349aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EJF41315.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EJF41315.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035C33A5
DNA polymerase III subunit delta
L3_098_023G1_scaffold_3_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22654..23265
DNA (612bp) protein (204aa)
ribonuclease M5 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361EA9C
Putative ribonuclease M5 {ECO:0000313|EMBL:EJF41306.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
TOPRIM domain-containing protein
L3_098_023G1_scaffold_3_22
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23267..23548
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KZJ9_CLOBM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41919.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_023G1_scaffold_3_23
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23628..25229
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0003184E01
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35470.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_098_023G1_scaffold_3_24
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25358..25675)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C081_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS75571.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
hypothetical protein
L3_098_023G1_scaffold_3_25
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25765..26862)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82259.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_098_023G1_scaffold_3_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26970..27167
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003727C54
PF06107 family protein {ECO:0000313|EMBL:EJF42557.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_098_023G1_scaffold_3_27
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27221..28303
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=1 Tax=Clostridium sp. CAG:557 RepID=R6HC80_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
prfA; Peptide chain release factor 1
L3_098_023G1_scaffold_3_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28275..29351
DNA (1077bp) protein (359aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035D0B63
ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L3_098_023G1_scaffold_3_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29344..29937
DNA (594bp) protein (198aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0X1W4_9CLOT
L3_098_023G1_scaffold_3_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29943..30596
DNA (654bp) protein (218aa)
Transglycosylase SLT domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0X1U5_9CLOT
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EJF42581.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
lytic transglycosylase catalytic subunit
Displaying items 1-30 of 266 in total

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