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L3_098_023G1_scaffold_17

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Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_023G1_scaffold_17_1

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177..2096
DNA (1920bp) protein (640aa)
Elongation factor 4 n=20 Tax=Staphylococcus epidermidis RepID=C5QXJ2_STAEP
Elongation factor 4 {ECO:0000313|EMBL:ETJ18605.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
GTP-binding protein LepA
L3_098_023G1_scaffold_17_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2215..3339
DNA (1125bp) protein (375aa)
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent , in heat shock gene cluster (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFE59594.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EFE59594.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Oxygen-independent coproporphyrinogen III oxidase, putative n=39 Tax=Staphylococcus epidermidis RepID=Q5HNW3_STAEQ
L3_098_023G1_scaffold_17_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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3439..4416
DNA (978bp) protein (326aa)
Heat-inducible transcription repressor HrcA n=53 Tax=Staphylococcus epidermidis RepID=HRCA_STAEQ
Heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_023G1_scaffold_17_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4445..5077
DNA (633bp) protein (211aa)
Protein GrpE n=44 Tax=Staphylococcus epidermidis RepID=GRPE_STAEQ
heat shock protein GrpE
Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L3_098_023G1_scaffold_17_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5133..6962
DNA (1830bp) protein (610aa)
Chaperone protein DnaK n=46 Tax=Staphylococcus epidermidis RepID=DNAK_STAEQ
dnaK; molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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7107..8228
DNA (1122bp) protein (374aa)
Chaperone protein DnaJ n=37 Tax=Staphylococcus epidermidis RepID=C5Q9K3_STAEP
Chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_023G1_scaffold_17_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8232..9170
DNA (939bp) protein (313aa)
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Ribosomal protein L11 methyltransferase n=30 Tax=Staphylococcus epidermidis RepID=PRMA_STAEQ
L3_098_023G1_scaffold_17_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9187..9924
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Ribosomal RNA small subunit methyltransferase E n=21 Tax=Staphylococcus epidermidis RepID=Q5HNW9_STAEQ
L3_098_023G1_scaffold_17_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9930..11276
DNA (1347bp) protein (449aa)
Uncharacterized protein n=52 Tax=Staphylococcus epidermidis RepID=Q5HNX0_STAEQ
MiaB family protein, possibly involved in tRNA or rRNA modification
Uncharacterized protein {ECO:0000313|EMBL:AAW54472.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_10
Staphylococcus pasteuri, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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11402..11578
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=34 Tax=Staphylococcus aureus RepID=I0C4T7_STAA5
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1276282 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus pasteuri SP1.;"
L3_098_023G1_scaffold_17_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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12424..13134
DNA (711bp) protein (237aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNX3_STAEQ
hypothetical protein
Nodulation efficiency protein D {ECO:0000313|EMBL:EFE59603.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_023G1_scaffold_17_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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13149..14138
DNA (990bp) protein (330aa)
UPF0365 protein SERP1140 n=78 Tax=Staphylococcus epidermidis RepID=Y1140_STAEQ
hypothetical protein
UPF0365 protein HMPREF0794_0425 {ECO:0000256|HAMAP-Rule:MF_01562}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_023G1_scaffold_17_13

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14154..14837
DNA (684bp) protein (228aa)
Uncharacterized protein n=38 Tax=Staphylococcus epidermidis RepID=Q5HNX5_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18618.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_023G1_scaffold_17_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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15123..16070
DNA (948bp) protein (316aa)
PhoH family protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNX6_STAEQ
Phosphate starvation-inducible protein PhoH,predicted ATPase
PhoH family protein {ECO:0000313|EMBL:AAW54466.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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16071..16538
DNA (468bp) protein (156aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Endoribonuclease YbeY n=43 Tax=Staphylococcus epidermidis RepID=YBEY_STAES
putative rRNA maturation factor YbeY
L3_098_023G1_scaffold_17_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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16540..16896
DNA (357bp) protein (119aa)
dgkA; diacylglycerol kinase (EC:2.7.1.107)
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:EFE59608.1}; EC=2.7.1.107 {ECO:0000313|EMBL:EFE59608.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Diacylglycerol kinase n=38 Tax=Staphylococcus epidermidis RepID=Q5HNX8_STAEQ
L3_098_023G1_scaffold_17_17

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16896..17300
DNA (405bp) protein (135aa)
Cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=40 Tax=Staphylococcus epidermidis RepID=Q5HNX9_STAEQ
Cytidine deaminase {ECO:0000313|EMBL:ETJ18622.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_023G1_scaffold_17_18

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17300..18199
DNA (900bp) protein (300aa)
GTPase Era n=11 Tax=Staphylococcus epidermidis RepID=H3UHA8_STAEP
GTPase Era {ECO:0000313|EMBL:ETJ18623.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
era; GTP-binding protein Era
L3_098_023G1_scaffold_17_19

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18225..18986
DNA (762bp) protein (254aa)
DNA repair protein RecO n=48 Tax=Staphylococcus epidermidis RepID=RECO_STAEQ
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000313|EMBL:ETJ18624.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_023G1_scaffold_17_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(19116..20507)
DNA (1392bp) protein (464aa)
Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00253}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00253};; Glycyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00253}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF_00253};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Glycine--tRNA ligase n=49 Tax=Staphylococcus epidermidis RepID=SYG_STAEQ
L3_098_023G1_scaffold_17_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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20975..21466
DNA (492bp) protein (164aa)
CBS domain protein n=28 Tax=Staphylococcus epidermidis RepID=Q5HNY4_STAEQ
ccpN; transcriptional repressor CcpN
CBS domain protein {ECO:0000313|EMBL:AAW54451.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_22

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21478..22296
DNA (819bp) protein (273aa)
Phosphotransferase n=13 Tax=Staphylococcus epidermidis RepID=V6QC39_STAEP
Uncharacterized protein {ECO:0000313|EMBL:ETJ18627.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATP/GTP-binding protein, SA1392 homolog
L3_098_023G1_scaffold_17_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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22470..24266
DNA (1797bp) protein (599aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000255|HAMAP-Rule:MF_00974}; EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00974};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
DNA primase n=50 Tax=Staphylococcus epidermidis RepID=DNAG_STAEQ
L3_098_023G1_scaffold_17_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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24537..25643
DNA (1107bp) protein (369aa)
RNA polymerase sigma factor SigA n=80 Tax=Staphylococcus epidermidis RepID=SIGA_STAEQ
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000255|HAMAP-Rule:MF_00963}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_25
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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25798..26487
DNA (690bp) protein (230aa)
Uncharacterized protein n=12 Tax=Staphylococcus epidermidis RepID=Q8CSD8_STAES
hypothetical protein
Methyltransferase {ECO:0000313|EMBL:ETJ12432.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_098_023G1_scaffold_17_26
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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26477..27577
DNA (1101bp) protein (367aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Putative GTP cyclohydrolase 1 type 2 n=45 Tax=Staphylococcus epidermidis RepID=GTPC1_STAEQ
FIG060293: Hypothetical protein
L3_098_023G1_scaffold_17_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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27612..28958
DNA (1347bp) protein (449aa)
ATP-dependent RNA helicase, DEAD/DEAH box family n=46 Tax=Staphylococcus epidermidis RepID=Q5HNZ0_STAEQ
ATP-dependent RNA helicase YqfR
ATP-dependent RNA helicase, DEAD/DEAH box family {ECO:0000313|EMBL:AAW54537.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_023G1_scaffold_17_28
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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28968..29858
DNA (891bp) protein (297aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Endonuclease IV (EC:3.1.21.2)
Endonuclease IV n=12 Tax=Staphylococcus epidermidis RepID=V6QBA3_STAEP
L3_098_023G1_scaffold_17_29
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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30076..30858
DNA (783bp) protein (261aa)
ABC transporter ATP-binding protein n=41 Tax=Staphylococcus epidermidis RepID=Q8CSE1_STAES
Zinc ABC transporter, ATP-binding protein ZnuC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETJ12427.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_098_023G1_scaffold_17_30
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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30892..31740
DNA (849bp) protein (283aa)
ABC transporter, permease protein n=47 Tax=Staphylococcus epidermidis RepID=Q5HNZ3_STAEQ
ABC transporter permease
ABC superfamily ATP binding cassette transporter, membrane protein {ECO:0000313|EMBL:ETJ12426.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Displaying items 1-30 of 137 in total

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