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L3_098_047G1_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_047G1_scaffold_121_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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799..1596
DNA (798bp) protein (266aa)
Uncharacterized protein n=41 Tax=Staphylococcus epidermidis RepID=Q8CSX0_STAES
Predicted ring-cleavage extradiol dioxygenase
Glyoxalase family protein {ECO:0000313|EMBL:EFE59512.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_2

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1601..2071
DNA (471bp) protein (157aa)
Secretory antigen SsaA n=26 Tax=Staphylococcus epidermidis RepID=Q8CPK1_STAES
secretory antigen SsaA
CHAP protein {ECO:0000313|EMBL:ETJ17519.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_047G1_scaffold_121_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2112..2645
DNA (534bp) protein (178aa)
Lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Lipoprotein signal peptidase n=9 Tax=Staphylococcus epidermidis RepID=C5Q8I3_STAEP
L3_098_047G1_scaffold_121_4

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2648..3565
DNA (918bp) protein (306aa)
Pseudouridine synthase n=48 Tax=Staphylococcus epidermidis RepID=Q8CSW9_STAES
hypothetical protein
Pseudouridine synthase {ECO:0000313|EMBL:ETJ17517.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_047G1_scaffold_121_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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3868..4395
DNA (528bp) protein (176aa)
Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR (EC:2.4.2.9)
Bifunctional protein PyrR n=45 Tax=Staphylococcus epidermidis RepID=PYRR_STAES
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4643..5935
DNA (1293bp) protein (431aa)
Uracil permease n=50 Tax=Staphylococcus epidermidis RepID=Q8CPJ8_STAES
Uracil permease
Putative permease {ECO:0000313|EMBL:EFE59507.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5961..6842
DNA (882bp) protein (294aa)
Aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Aspartate carbamoyltransferase n=66 Tax=Staphylococcus epidermidis RepID=PYRB_STAES
L3_098_047G1_scaffold_121_8

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6860..8137
DNA (1278bp) protein (426aa)
Dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=48 Tax=Staphylococcus epidermidis RepID=C5Q8I8_STAEP
Dihydroorotase {ECO:0000313|EMBL:ETJ17513.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_098_047G1_scaffold_121_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8138..9238
DNA (1101bp) protein (367aa)
Carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000255|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000255|HAMAP-Rule:MF_01209}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Carbamoyl-phosphate synthase small chain n=33 Tax=Staphylococcus epidermidis RepID=CARA_STAES
L3_098_047G1_scaffold_121_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9231..12404
DNA (3174bp) protein (1058aa)
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Carbamoyl-phosphate synthase large chain n=13 Tax=Staphylococcus epidermidis RepID=C5Q8J0_STAEP
L3_098_047G1_scaffold_121_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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12433..13131
DNA (699bp) protein (233aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Orotidine 5'-phosphate decarboxylase n=3 Tax=Staphylococcus epidermidis RepID=D4FJQ1_STAEP
orotidine 5'-phosphate decarboxylase
L3_098_047G1_scaffold_121_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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13132..13743
DNA (612bp) protein (204aa)
Orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Orotate phosphoribosyltransferase n=45 Tax=Staphylococcus epidermidis RepID=PYRE_STAES
L3_098_047G1_scaffold_121_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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13769..13975
DNA (207bp) protein (69aa)
Uncharacterized protein n=47 Tax=Staphylococcus epidermidis RepID=Q8CSW6_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59500.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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14513..14920
DNA (408bp) protein (136aa)
Uncharacterized protein n=52 Tax=Staphylococcus epidermidis RepID=Q8CSW5_STAES
hypothetical protein
3-demethylubiquinone-9 3-methyltransferase domain protein {ECO:0000313|EMBL:EFE59498.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(14982..16679)
DNA (1698bp) protein (566aa)
Fibronectin-binding protein A domain protein n=7 Tax=Staphylococcus RepID=C5Q8J6_STAEP
Fibronectin-binding protein A domain protein {ECO:0000313|EMBL:EFE59497.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Fibronectin/fibrinogen-binding protein
L3_098_047G1_scaffold_121_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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16949..17572
DNA (624bp) protein (208aa)
Guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Guanylate kinase n=55 Tax=Staphylococcus epidermidis RepID=KGUA_STAES
L3_098_047G1_scaffold_121_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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17572..17784
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA-directed RNA polymerase subunit omega n=30 Tax=Staphylococcus epidermidis RepID=D4FJP4_STAEP
L3_098_047G1_scaffold_121_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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18322..19521
DNA (1200bp) protein (400aa)
Phosphopantothenoylcysteine decarboxylase / Phosphopantothenoylcysteine synthetase (EC:4.1.1.36)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EFE59494.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EFE59494.1};; EC=6.3.2.5 {ECO:0000313|EMBL:EFE59494.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Pantothenate metabolism flavoprotein n=38 Tax=Staphylococcus epidermidis RepID=Q8CPJ1_STAES
L3_098_047G1_scaffold_121_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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19521..21929
DNA (2409bp) protein (803aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Primosomal protein N n=11 Tax=Staphylococcus epidermidis RepID=D4FJP2_STAEP
Helicase PriA essential for oriC/DnaA-independent DNA replication
L3_098_047G1_scaffold_121_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22037..22240)
DNA (204bp) protein (68aa)
Uncharacterized protein n=79 Tax=Staphylococcus epidermidis RepID=Q5HPX7_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54198.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_098_047G1_scaffold_121_21
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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22462..22950
DNA (489bp) protein (163aa)
Peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Peptide deformylase-like n=66 Tax=Staphylococcus epidermidis RepID=DEFL_STAEQ
L3_098_047G1_scaffold_121_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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22943..23875
DNA (933bp) protein (311aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Methionyl-tRNA formyltransferase n=43 Tax=Staphylococcus epidermidis RepID=FMT_STAES
L3_098_047G1_scaffold_121_23
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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23872..25179
DNA (1308bp) protein (436aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
RNA-binding Sun protein n=26 Tax=Staphylococcus epidermidis RepID=Q8CPI8_STAES
RNA-binding Sun protein
L3_098_047G1_scaffold_121_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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25182..26276
DNA (1095bp) protein (365aa)
rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase (EC:2.1.1.192)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Probable dual-specificity RNA methyltransferase RlmN n=39 Tax=Staphylococcus epidermidis RepID=RLMN_STAES
L3_098_047G1_scaffold_121_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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26283..27026
DNA (744bp) protein (248aa)
Protein phosphatase 2C n=39 Tax=Staphylococcus epidermidis RepID=C5Q8K6_STAEP
Protein serine/threonine phosphatase PrpC,regulation of stationary phase
Protein phosphatase 2C {ECO:0000313|EMBL:EFE59487.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_098_047G1_scaffold_121_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27023..29026
DNA (2004bp) protein (668aa)
Kinase domain protein n=19 Tax=Staphylococcus epidermidis RepID=D4FJN5_STAEP
Kinase domain protein {ECO:0000313|EMBL:EFE59486.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Serine/threonine protein kinase PrkC, regulator of stationary phase
L3_098_047G1_scaffold_121_27
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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29320..30210
DNA (891bp) protein (297aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
GTPase n=1 Tax=Staphylococcus epidermidis RepID=UPI000003B78A
hypothetical protein
L3_098_047G1_scaffold_121_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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30211..30855
DNA (645bp) protein (215aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Ribulose-phosphate 3-epimerase n=44 Tax=Staphylococcus epidermidis RepID=Q8CPI6_STAES
ribulose-phosphate 3-epimerase
L3_098_047G1_scaffold_121_29
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30860..31495
DNA (636bp) protein (212aa)
Uncharacterized protein n=38 Tax=Staphylococcus epidermidis RepID=Q8CSV7_STAES
hypothetical protein
Thiamine diphosphokinase {ECO:0000313|EMBL:ETJ12776.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_098_047G1_scaffold_121_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(31578..31766)
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=81 Tax=Staphylococcus epidermidis RepID=RL28_STAEQ
LSU ribosomal protein L28p
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Displaying items 1-30 of 53 in total

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