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L3_098_220G1_scaffold_18

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Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_18_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..783)
DNA (783bp) protein (261aa)
Outer membrane porin protein NmpC n=3 Tax=Escherichia coli RepID=E7U9J3_ECOLX
outer membrane porin; DLP12 prophage
Putative outer membrane porin protein C precurser,Outer membrane porin protein OmpD,outer membrane porin protein C,Outer membrane protein (Porin),Gram-negative porin {ECO:0000313|EMBL:CDX07343.1}; TaxID=623 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri.;"
L3_098_220G1_scaffold_18_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1297..1965)
DNA (669bp) protein (223aa)
Gifsy-2 prophage protein n=3 Tax=Escherichia coli RepID=E7U9J4_ECOLX
yedK; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ12999.1}; TaxID=1072459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O7:K1 str. CE10.;"
L3_098_220G1_scaffold_18_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2072..2305)
DNA (234bp) protein (78aa)
UPF0033 protein YedF n=1782 Tax=Enterobacteriaceae RepID=YEDF_ECO57
yedF; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBG34916.1}; TaxID=216592 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O44:H18 (strain 042 / EAEC).;"
L3_098_220G1_scaffold_18_4
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2302..3507)
DNA (1206bp) protein (402aa)
UPF0394 inner membrane protein YedE n=120 Tax=Enterobacteriaceae RepID=YEDE_ECOLI
yedE; putative inner membrane protein
Putative transport system permease protein {ECO:0000313|EMBL:EFW57636.1}; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
L3_098_220G1_scaffold_18_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3694..4107
DNA (414bp) protein (138aa)
Uncharacterized protein n=865 Tax=Enterobacteriaceae RepID=C3T502_ECOLX
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EII19430.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L3_098_220G1_scaffold_18_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4141..5628)
DNA (1488bp) protein (496aa)
alpha-amylase (EC:3.2.1.1)
Cytoplasmic alpha-amylase n=76 Tax=Enterobacteriaceae RepID=E2QNC3_ECOLX
Cytoplasmic alpha-amylase {ECO:0000313|EMBL:ABF04115.1}; TaxID=373384 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri serotype 5b (strain 8401).;"
L3_098_220G1_scaffold_18_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5706..6071)
DNA (366bp) protein (122aa)
Flagellar protein FliT n=110 Tax=Escherichia RepID=FLIT_ECO7I
fliT; putative chaperone
Flagellar protein FliT {ECO:0000256|HAMAP-Rule:MF_01180, ECO:0000256|SAAS:SAAS00068921}; TaxID=670890 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LT-68.;"
L3_098_220G1_scaffold_18_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6071..6481)
DNA (411bp) protein (137aa)
Flagellar biosynthesis repressor of class 3a and 3b operons (RflA activity) n=769 Tax=Enterobacteriaceae RepID=E2QNC1_ECOLX
fliS; flagellar protein FliS
Flagellar protein FliS {ECO:0000313|EMBL:KDZ35558.1}; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
L3_098_220G1_scaffold_18_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6506..7912)
DNA (1407bp) protein (469aa)
Flagellar hook-associated protein FliD n=2 Tax=Escherichia coli RepID=E7U9K1_ECOLX
fliD; flagellar capping protein
Flagellar hook-associated protein 2 {ECO:0000313|EMBL:EFK49886.1}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
L3_098_220G1_scaffold_18_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8178..9815
DNA (1638bp) protein (546aa)
Flagellar biosynthesis protein FliC n=4 Tax=Escherichia coli RepID=E7U9K2_ECOLX
Flagellin {ECO:0000313|EMBL:EGI41026.1}; TaxID=656444 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA280.;"
fliC; flagellin
L3_098_220G1_scaffold_18_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10134..10853
DNA (720bp) protein (240aa)
RNA polymerase sigma factor FliA n=959 Tax=Enterobacteriaceae RepID=FLIA_ECO57
RNA polymerase sigma factor for flagellar operon
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
L3_098_220G1_scaffold_18_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10899..11450
DNA (552bp) protein (184aa)
FliZ protein n=104 Tax=Escherichia coli RepID=D3GXH3_ECO44
fliZ; flagella biosynthesis protein FliZ
Flagellar regulatory protein FliZ {ECO:0000313|EMBL:ELG89026.1}; TaxID=1182725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE146.;"
L3_098_220G1_scaffold_18_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11481..12338
DNA (858bp) protein (286aa)
Cystine-binding periplasmic protein n=1 Tax=Escherichia coli UMEA 3240-1 RepID=T9H7Y6_ECOLX
cystine transporter subunit
Cystine-binding periplasmic protein {ECO:0000313|EMBL:EOV07770.1}; TaxID=1169355 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE38.;"
L3_098_220G1_scaffold_18_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12443..13429
DNA (987bp) protein (329aa)
yedO; D-cysteine desulfhydrase (EC:4.4.1.15)
D-cysteine desulfhydrase {ECO:0000256|HAMAP-Rule:MF_01045}; EC=4.4.1.15 {ECO:0000256|HAMAP-Rule:MF_01045};; TaxID=869681 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0522.;"
D-cysteine desulfhydrase n=8 Tax=Escherichia coli RepID=D7Y0X3_ECOLX
L3_098_220G1_scaffold_18_15
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13444..14112
DNA (669bp) protein (223aa)
Inner membrane amino-acid ABC transporter permease protein YecS n=1080 Tax=Enterobacteriaceae RepID=YECS_ECOL6
putative transporter subunit
Amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein {ECO:0000313|EMBL:EJZ66556.1}; TaxID=766155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1485-80.;"
L3_098_220G1_scaffold_18_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14109..14861
DNA (753bp) protein (251aa)
Uncharacterized amino-acid ABC transporter ATP-binding protein YecC n=60 Tax=Escherichia coli RepID=YECC_ECOLI
ABC transporter
ABC transporter family protein {ECO:0000313|EMBL:KEL68336.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L3_098_220G1_scaffold_18_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15091..15813
DNA (723bp) protein (241aa)
Regulatory protein sdiA n=389 Tax=Escherichia RepID=E2QNB2_ECOLX
sdiA; DNA-binding transcriptional activator
Regulatory protein SdiA {ECO:0000313|EMBL:EQX82595.1}; TaxID=1281210 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3190-1.;"
L3_098_220G1_scaffold_18_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15881..16105)
DNA (225bp) protein (75aa)
Uncharacterized protein YecF n=1180 Tax=Enterobacteriaceae RepID=YECF_ECOL6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOV98108.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L3_098_220G1_scaffold_18_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16564..17220
DNA (657bp) protein (219aa)
Response regulator UvrY n=794 Tax=Enterobacteriaceae RepID=UVRY_ECO57
response regulator
DNA-binding response regulator UvrY in two-component regulatory system with BarA {ECO:0000313|EMBL:CAS09580.1}; TaxID=574521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O127:H6 (strain E2348/69 / EPEC).;"
L3_098_220G1_scaffold_18_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17217..19049
DNA (1833bp) protein (611aa)
UvrABC system protein C n=1043 Tax=Enterobacteriaceae RepID=UVRC_ECO24
UvrABC system protein C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
L3_098_220G1_scaffold_18_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19106..19654
DNA (549bp) protein (183aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:5.4.3.8)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000256|HAMAP-Rule:MF_01437}; EC=2.7.8.5 {ECO:0000256|HAMAP-Rule:MF_01437};; Phosphatidylglycerophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01437}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1265 Tax=Enterobacteriaceae RepID=PGSA_ECO57
L3_098_220G1_scaffold_18_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20303..20968
DNA (666bp) protein (222aa)
Conserved metal-binding protein n=65 Tax=Escherichia coli RepID=B7UST0_ECO27
hypothetical protein
YecA family protein {ECO:0000313|EMBL:EHU10611.1}; TaxID=868133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1A.;"
L3_098_220G1_scaffold_18_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21030..22241)
DNA (1212bp) protein (404aa)
Tyrosine-specific transport protein n=379 Tax=Escherichia RepID=E2QNA6_ECOLX
tyrP; Tyrosine permease
Tyrosine-specific transporter {ECO:0000313|EMBL:EQP55346.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_098_220G1_scaffold_18_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22432..22671
DNA (240bp) protein (80aa)
Uncharacterized protein n=3 Tax=Escherichia coli RepID=B7USS8_ECO27
yecH; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAS09575.1}; TaxID=574521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O127:H6 (strain E2348/69 / EPEC).;"
L3_098_220G1_scaffold_18_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22709..23206)
DNA (498bp) protein (166aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=869669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2741.;"
Ferritin-1 n=1401 Tax=Enterobacteriaceae RepID=FTNA_ECO57
ferritin
L3_098_220G1_scaffold_18_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23378..23701)
DNA (324bp) protein (108aa)
Uncharacterized protein yecR n=260 Tax=Escherichia coli RepID=E2QNA3_ECOLX
yecR; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQP55343.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_098_220G1_scaffold_18_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24166..24417
DNA (252bp) protein (84aa)
Uncharacterized protein YecJ n=1044 Tax=Enterobacteriaceae RepID=YECJ_ECOL6
yecJ; YecJ protein
Uncharacterized protein {ECO:0000313|EMBL:EZK22604.1}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C2.;"
L3_098_220G1_scaffold_18_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24495..24998)
DNA (504bp) protein (168aa)
Ferritin-like protein 2 n=1302 Tax=Enterobacteriaceae RepID=FTNB_ECO57
ferritin-like protein
Ferritin-like protein 2 {ECO:0000313|EMBL:EFE62545.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_098_220G1_scaffold_18_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25795..26784
DNA (990bp) protein (330aa)
L-arabinose-binding periplasmic protein n=198 Tax=Enterobacteriaceae RepID=E2QNA0_ECOLX
araF; L-arabinose-binding periplasmic protein
L-arabinose-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR002816}; Short=ABP {ECO:0000256|PIRNR:PIRNR002816};; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE70.;"
L3_098_220G1_scaffold_18_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26854..28368
DNA (1515bp) protein (505aa)
araG; L-arabinose transporter ATP-binding protein (EC:3.6.3.17)
Arabinose import ATP-binding protein AraG {ECO:0000256|HAMAP-Rule:MF_01721}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01721};; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Arabinose import ATP-binding protein AraG n=82 Tax=Escherichia coli RepID=ARAG_ECOL5
Displaying items 1-30 of 143 in total

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