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L3_098_220G1_scaffold_47

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Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_47_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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110..217
DNA (108bp) protein (36aa)
Small toxic polypeptide ldrA/ldrC n=1 Tax=Escherichia coli UMEA 3152-1 RepID=T8TBQ7_ECOLX
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EHX33739.1}; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
L3_098_220G1_scaffold_47_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(365..1219)
DNA (855bp) protein (285aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1146 Tax=Enterobacteriaceae RepID=KDSA_ECO24
L3_098_220G1_scaffold_47_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1255..2064)
DNA (810bp) protein (270aa)
Protein sirB1 n=216 Tax=Escherichia RepID=E2QLG8_ECOLX
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EHU31384.1}; TaxID=868138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2A.;"
L3_098_220G1_scaffold_47_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2068..2460)
DNA (393bp) protein (131aa)
Protein sirB2 n=351 Tax=Escherichia RepID=E2QLG7_ECOLX
ychQ; transcriptional regulator
Protein sirB2 {ECO:0000313|EMBL:EZJ43632.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L3_098_220G1_scaffold_47_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2457..3290)
DNA (834bp) protein (278aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Release factor glutamine methyltransferase n=40 Tax=Escherichia coli RepID=E2QLG6_ECOLX
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
L3_098_220G1_scaffold_47_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3290..4372)
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=1336 Tax=Enterobacteriaceae RepID=RF1_ECO24
prfA; peptide chain release factor RF-1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1444180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-210-07_S3_C3.;"
L3_098_220G1_scaffold_47_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4414..5670)
DNA (1257bp) protein (419aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Glutamyl-tRNA reductase n=172 Tax=Escherichia coli RepID=H1ELB4_ECOLX
hemA; glutamyl-tRNA reductase
L3_098_220G1_scaffold_47_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5884..6507
DNA (624bp) protein (208aa)
Outer-membrane lipoprotein LolB n=135 Tax=Enterobacteriaceae RepID=LOLB_ECO45
lolB; outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_098_220G1_scaffold_47_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6507..7358
DNA (852bp) protein (284aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=21 Tax=Escherichia coli RepID=E7U668_ECOLX
L3_098_220G1_scaffold_47_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..7586
DNA (144bp) protein (48aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1281269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3718-1.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Escherichia coli UMEA 3955-1 RepID=T9VQH9_ECOLX
prsA; ribose-phosphate pyrophosphokinase
L3_098_220G1_scaffold_47_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7648..8379
DNA (732bp) protein (244aa)
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
Ribose-phosphate pyrophosphokinase n=7 Tax=Escherichia coli RepID=M8MM34_ECOLX
L3_098_220G1_scaffold_47_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8531..10183
DNA (1653bp) protein (551aa)
Predicted transporter n=6 Tax=Escherichia RepID=B7UQ94_ECO27
Sulfate permease family protein {ECO:0000313|EMBL:EHU16744.1}; TaxID=868134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1B.;"
ychM; sulfate transporter YchM
L3_098_220G1_scaffold_47_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..10516)
DNA (279bp) protein (93aa)
Uncharacterized protein YchH n=1385 Tax=Enterobacteriaceae RepID=YCHH_ECO57
ychH; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAR02599.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_098_220G1_scaffold_47_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10794..11378
DNA (585bp) protein (195aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
Peptidyl-tRNA hydrolase n=1174 Tax=Enterobacteriaceae RepID=PTH_ECO24
L3_098_220G1_scaffold_47_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11495..12586
DNA (1092bp) protein (364aa)
Ribosome-binding ATPase YchF n=355 Tax=Escherichia RepID=E2QKY3_ECOLX
ychF; GTP-dependent nucleic acid-binding protein EngD
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
L3_098_220G1_scaffold_47_16
Edwardsiella tarda, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12801..13976
DNA (1176bp) protein (392aa)
Integrase n=2 Tax=Escherichia coli RepID=E7U674_ECOLX
integrase
Putative integrase {ECO:0000313|EMBL:ACY84238.1}; TaxID=498217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella tarda (strain EIB202).;"
L3_098_220G1_scaffold_47_17
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14127..15200)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8TBP2_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EHT08632.1}; TaxID=883125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca 10-5250.;"
protein kinase
L3_098_220G1_scaffold_47_18
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15251..16171)
DNA (921bp) protein (307aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8T499_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EHT08633.1}; TaxID=883125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca 10-5250.;"
hypothetical protein
L3_098_220G1_scaffold_47_19
unknown

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comp(16125..16217)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3152-1 RepID=T8TF11_ECOLX
L3_098_220G1_scaffold_47_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16598..20434)
DNA (3837bp) protein (1279aa)
Putative uncharacterized protein n=1 Tax=Escherichia coli WV_060327 RepID=E7U677_ECOLX
DNA-binding protein {ECO:0000313|EMBL:KJC05616.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
DNA-binding protein
L3_098_220G1_scaffold_47_21
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20948..22321)
DNA (1374bp) protein (458aa)
Putative uncharacterized protein n=1 Tax=Escherichia coli WV_060327 RepID=E7U678_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65274.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
hypothetical protein
L3_098_220G1_scaffold_47_22
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22872..23825)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8TBM7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65275.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
hypothetical protein
L3_098_220G1_scaffold_47_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23921..24379)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3152-1 RepID=T8T486_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJO83198.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_098_220G1_scaffold_47_24
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24381..24578)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8TEZ6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65277.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
phage protein
L3_098_220G1_scaffold_47_25
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24802..25416
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3152-1 RepID=T8U3W2_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65278.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
hypothetical protein
L3_098_220G1_scaffold_47_26
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25403..26332)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8U5W0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65279.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
integrase
L3_098_220G1_scaffold_47_27
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26379..26831)
DNA (453bp) protein (151aa)
DNA repair protein RadC n=2 Tax=Escherichia coli RepID=E7U682_ECOLX
DNA repair protein RadC {ECO:0000313|EMBL:ERK13371.1}; TaxID=1332070 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola AU-P3(3).;"
DNA repair protein
L3_098_220G1_scaffold_47_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26833..27372)
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8T469_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESK11065.1}; TaxID=1280998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 50 (4-2593475).;"
L3_098_220G1_scaffold_47_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27414..27836)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8TEY1_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI54702.1}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
L3_098_220G1_scaffold_47_30
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28160..28648)
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T8U3V6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOW65283.1}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
hypothetical protein
Displaying items 1-30 of 112 in total

View Taxonomy