ggKbase home page

L3_098_220G1_scaffold_108

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_108_1
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

166..1530
DNA (1365bp) protein (455aa)
Pilus biosynthesis protein TapB n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G006_CLOPA
Putative pilus biogenesis protein {ECO:0000313|EMBL:AJG98421.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
pulE; type II secretion system protein E
L3_098_220G1_scaffold_108_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1520..2608
DNA (1089bp) protein (363aa)
Type II secretory pathway, component PulF n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TE00_9CLOT
pilus biogenesis protein
Type II secretory pathway, component PulF {ECO:0000313|EMBL:EKQ58193.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_098_220G1_scaffold_108_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2605..3045
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MT16_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43678.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3047..3478
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW54_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43677.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3468..3920
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M102_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI99726.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_098_220G1_scaffold_108_6
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3911..4345
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0003162AB0
Uncharacterized protein {ECO:0000313|EMBL:ETD69492.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_098_220G1_scaffold_108_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4338..5015
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TE05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ58198.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_098_220G1_scaffold_108_8
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4993..5406
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UC51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ58199.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_098_220G1_scaffold_108_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5399..5755
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M106_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI99730.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_098_220G1_scaffold_108_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5913..6470
DNA (558bp) protein (186aa)
UPI0003D65E4E related cluster n=1 Tax=unknown RepID=UPI0003D65E4E
efp; elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6553..6915
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LU33_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR33863.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_098_220G1_scaffold_108_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7120..8055
DNA (936bp) protein (312aa)
Stage III sporulation protein AA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TE09_9CLOT
Stage III sporulation protein AA {ECO:0000313|EMBL:EKQ58203.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
sporulation stage III, protein AA
L3_098_220G1_scaffold_108_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8043..8561
DNA (519bp) protein (173aa)
Stage III sporulation protein AB n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G175_CLOPA
Stage III sporulation protein SpoAB {ECO:0000313|EMBL:AJG98433.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
stage III sporulation protein SpoAB
L3_098_220G1_scaffold_108_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8593..8790
DNA (198bp) protein (66aa)
Stage III sporulation protein AC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW44_CLOSA
stage III sporulation protein AC
Stage III sporulation protein AC {ECO:0000313|EMBL:AGX43667.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8800..9183
DNA (384bp) protein (128aa)
Sporulation stage III, protein AD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVJ6_CLOSA
sporulation stage III, protein AD
Sporulation stage III, protein AD {ECO:0000313|EMBL:AGX43666.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9193..10419
DNA (1227bp) protein (409aa)
Stage III sporulation protein AE n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FYT3_CLOPA
Stage III sporulation protein AE {ECO:0000313|EMBL:ETD69429.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
sporulation stage III, protein AE
L3_098_220G1_scaffold_108_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10425..11015
DNA (591bp) protein (197aa)
Stage III sporulation protein AF n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TE13_9CLOT
Stage III sporulation protein AF {ECO:0000313|EMBL:EKQ58208.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
stage III sporulation protein AF
L3_098_220G1_scaffold_108_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11028..11627
DNA (600bp) protein (200aa)
Stage III sporulation protein AG n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MT03_CLOSA
stage III sporulation protein AG
Stage III sporulation protein AG {ECO:0000313|EMBL:AGX43663.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11634..12191
DNA (558bp) protein (186aa)
Stage III sporulation protein AH n=5 Tax=Clostridium butyricum RepID=B1QW21_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88432.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
SpoIIIAH-like protein
L3_098_220G1_scaffold_108_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12278..12658
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVJ2_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43661.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12779..13183
DNA (405bp) protein (135aa)
N utilization substance protein B homolog n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJL2_9CLOT
nusB; N utilization substance protein B
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_098_220G1_scaffold_108_22
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13208..14056
DNA (849bp) protein (283aa)
folD1; bifunctional protein FolD (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MF10_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_098_220G1_scaffold_108_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14046..15251
DNA (1206bp) protein (402aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. DL-VIII RepID=G7M120_9CLOT
xseA; exodeoxyribonuclease VII large subunit
L3_098_220G1_scaffold_108_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15254..15475
DNA (222bp) protein (74aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW36_CLOSA
L3_098_220G1_scaffold_108_25
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15462..16334
DNA (873bp) protein (291aa)
ispA; farnesyl diphosphate synthase IspA (EC:2.5.1.10)
Farnesyl diphosphate synthase IspA {ECO:0000313|EMBL:AGX43656.1}; EC=2.5.1.10 {ECO:0000313|EMBL:AGX43656.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Farnesyl diphosphate synthase IspA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVI6_CLOSA
L3_098_220G1_scaffold_108_26
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16351..18204
DNA (1854bp) protein (618aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M123_9CLOT
1-deoxy-D-xylulose-5-phosphate synthase
L3_098_220G1_scaffold_108_27
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18216..19025
DNA (810bp) protein (270aa)
yqxC; putative rRNA methyltransferase YqxC (EC:2.1.1.-)
Putative rRNA methyltransferase YqxC {ECO:0000313|EMBL:AGX43654.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGX43654.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative rRNA methyltransferase YqxC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS71_CLOSA
L3_098_220G1_scaffold_108_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19042..19896
DNA (855bp) protein (285aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase PpnK (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSZ4_CLOSA
L3_098_220G1_scaffold_108_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19893..20345
DNA (453bp) protein (151aa)
Arginine repressor n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW31_CLOSA
argR; arginine repressor
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_108_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20364..22055
DNA (1692bp) protein (564aa)
DNA repair protein RecN n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVI1_CLOSA
recN; DNA repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 67 in total

View Taxonomy