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L3_098_220G1_scaffold_183

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_183_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(119..328)
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V9S0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50362.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
phage integrase
L3_098_220G1_scaffold_183_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(549..932)
DNA (384bp) protein (128aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHZ3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04506.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_220G1_scaffold_183_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1053..1430)
DNA (378bp) protein (126aa)
Anaerobic C4-dicarboxylate transport protein n=3 Tax=Bifidobacterium RepID=K2MEE4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82971.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
anaerobic C4-dicarboxylate transport protein
L3_098_220G1_scaffold_183_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1445..2119)
DNA (675bp) protein (225aa)
Transcriptional regulator n=4 Tax=Bifidobacterium RepID=E4NWY5_BIFBP
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:KFI43032.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_098_220G1_scaffold_183_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2214..2651)
DNA (438bp) protein (146aa)
GarA Signal transduction protein n=4 Tax=Bifidobacterium RepID=E4NWY6_BIFBP
garA; signal transduction protein GarA
Putative oxoglutarate dehydrogenase inhibitor {ECO:0000313|EMBL:ERI82973.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98186.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_098_220G1_scaffold_183_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2657..3478)
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=E4V9S5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50367.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_098_220G1_scaffold_183_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3485..3817)
DNA (333bp) protein (111aa)
Small basic protein n=8 Tax=Bifidobacterium RepID=E4NWY8_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50255.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_098_220G1_scaffold_183_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3818..4789)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GFJ6_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23180.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_183_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4779..5432)
DNA (654bp) protein (218aa)
CDP-diacylglycerol--glycerol-3-phosphate-3-phosph atidyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EP39_BIFBS
pgsA1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate-3-phosph atidyltransferase {ECO:0000313|EMBL:ADO53146.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_183_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5449..6300)
DNA (852bp) protein (284aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ATP phosphoribosyltransferase n=7 Tax=Bifidobacterium RepID=E3EP40_BIFBS
hisG; ATP phosphoribosyltransferase
L3_098_220G1_scaffold_183_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6335..6598)
DNA (264bp) protein (88aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Phosphoribosyl-ATP pyrophosphatase n=8 Tax=Bifidobacterium RepID=E3EP41_BIFBS
hisE; phosphoribosyl-ATP pyrophosphohydrolase
L3_098_220G1_scaffold_183_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6710..7375)
DNA (666bp) protein (222aa)
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Ribulose-phosphate 3-epimerase n=9 Tax=Bifidobacterium RepID=E3EP42_BIFBS
L3_098_220G1_scaffold_183_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7503..8495)
DNA (993bp) protein (331aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Prolipoprotein diacylglyceryl transferase n=3 Tax=Bifidobacterium RepID=E3EP43_BIFBS
lgt; prolipoprotein diacylglyceryl transferase
L3_098_220G1_scaffold_183_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8593..9465)
DNA (873bp) protein (291aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Tryptophan synthase alpha chain n=4 Tax=Bifidobacterium RepID=U2DN41_BIFBI
L3_098_220G1_scaffold_183_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9498..11585)
DNA (2088bp) protein (696aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta subunit n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCI3_9BIFI
L3_098_220G1_scaffold_183_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11784..13919)
DNA (2136bp) protein (712aa)
Ribosome biogenesis GTPase Der n=2 Tax=Bifidobacterium bifidum RepID=E4V9T5_BIFBI
GTPase Der {ECO:0000256|SAAS:SAAS00038180}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
GTP-binding protein
L3_098_220G1_scaffold_183_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13916..14692)
DNA (777bp) protein (259aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=E3EP47_BIFBS
rluB; ribosomal large subunit pseudouridine synthase B
L3_098_220G1_scaffold_183_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14859..15764
DNA (906bp) protein (302aa)
Major intrinsic protein n=6 Tax=Bifidobacterium RepID=E3EP48_BIFBS
major intrinsic protein
Major intrinsic protein {ECO:0000313|EMBL:CDB23007.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_183_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15744..16037)
DNA (294bp) protein (98aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WI10_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53156.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_183_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16130..17761)
DNA (1632bp) protein (544aa)
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HS99_BIFBI
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_098_220G1_scaffold_183_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17709..19070)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MW03_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16138.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_098_220G1_scaffold_183_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19067..19993)
DNA (927bp) protein (309aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=3 Tax=Bifidobacterium bifidum RepID=E4V9U1_BIFBI
sucD; succinyl-CoA synthetase alpha chain
L3_098_220G1_scaffold_183_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19990..21195)
DNA (1206bp) protein (402aa)
Succinate-CoA ligase, beta subunit {ECO:0000313|EMBL:EFR50384.1}; EC=6.2.1.- {ECO:0000313|EMBL:EFR50384.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Succinyl-CoA synthetase beta chain n=4 Tax=Bifidobacterium RepID=E3EP53_BIFBS
succ; succinyl-CoA synthetase beta chain
L3_098_220G1_scaffold_183_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21280..21861)
DNA (582bp) protein (194aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Adenine phosphoribosyltransferase n=5 Tax=Bifidobacterium RepID=E3EP54_BIFBS
apt; adenine phosphoribosyltransferase
L3_098_220G1_scaffold_183_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21879..22304)
DNA (426bp) protein (142aa)
YajC Protein translocase subunit n=4 Tax=Bifidobacterium bifidum RepID=E4NX06_BIFBP
yajC; YajC Protein translocase subunit
Preprotein translocase subunit YajC {ECO:0000313|EMBL:EKF16142.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_098_220G1_scaffold_183_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22365..23450)
DNA (1086bp) protein (362aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Holliday junction ATP-dependent DNA helicase RuvB n=4 Tax=Bifidobacterium bifidum RepID=E4NX07_BIFBP
ruvB; holliday junction DNA helicase RuvB
L3_098_220G1_scaffold_183_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23457..24074)
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Bifidobacterium bifidum RepID=E4V9U6_BIFBI
ruvA; holliday junction DNA helicase
L3_098_220G1_scaffold_183_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24074..24250)
DNA (177bp) protein (59aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DT99_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82996.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_098_220G1_scaffold_183_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24250..24831)
DNA (582bp) protein (194aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Crossover junction endodeoxyribonuclease RuvC n=7 Tax=Bifidobacterium RepID=E3EP59_BIFBS
ruvC; crossover junction endodeoxyribonuclease ruvC
L3_098_220G1_scaffold_183_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24838..25596)
DNA (759bp) protein (253aa)
Probable transcriptional regulatory protein BBIF_0962 n=8 Tax=Bifidobacterium RepID=E3EP60_BIFBS
hypothetical protein
Probable transcriptional regulatory protein B216_06936 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Displaying items 1-30 of 68 in total

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