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L3_098_220G1_scaffold_186

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_186_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..325)
DNA (324bp) protein (108aa)
Divergent AAA domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VA83_BIFBI
Divergent AAA domain protein {ECO:0000313|EMBL:EFR50525.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_098_220G1_scaffold_186_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(280..1149)
DNA (870bp) protein (290aa)
Divergent AAA domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VA83_BIFBI
Divergent AAA domain protein {ECO:0000313|EMBL:EFR50525.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
transcriptional regulator
L3_098_220G1_scaffold_186_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1164..1376)
DNA (213bp) protein (71aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GVR6_BIFLN
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EEI80886.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
restriction endonuclease S subunit
L3_098_220G1_scaffold_186_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1774..3012)
DNA (1239bp) protein (413aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Argininosuccinate synthase n=8 Tax=Bifidobacterium RepID=E3ER30_BIFBS
argG; argininosuccinate synthase
L3_098_220G1_scaffold_186_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3116..3634)
DNA (519bp) protein (173aa)
Arginine repressor n=6 Tax=Bifidobacterium RepID=E3ER31_BIFBS
argR; Arginine repressor, ArgR
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_186_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3707..4672)
DNA (966bp) protein (322aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
argF; ornithine carbamoyltransferase ArgF (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFU6_9BIFI
L3_098_220G1_scaffold_186_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4775..6064)
DNA (1290bp) protein (430aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Acetylornithine aminotransferase n=4 Tax=Bifidobacterium RepID=E3ER33_BIFBS
argD; acetylornithine aminotransferase
L3_098_220G1_scaffold_186_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6054..7010)
DNA (957bp) protein (319aa)
argB; acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Acetylglutamate kinase n=7 Tax=Bifidobacterium RepID=E3ER34_BIFBS
L3_098_220G1_scaffold_186_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7070..8239)
DNA (1170bp) protein (390aa)
Arginine biosynthesis bifunctional protein ArgJ n=2 Tax=Bifidobacterium bifidum RepID=K2HVB5_BIFBI
argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_098_220G1_scaffold_186_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8236..9330)
DNA (1095bp) protein (365aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=3 Tax=Bifidobacterium bifidum RepID=K2H8V7_BIFBI
argC; N-acetyl-gamma-glutamyl-phosphate reductase
L3_098_220G1_scaffold_186_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9433..10086)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M410_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15795.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_098_220G1_scaffold_186_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10121..12730)
DNA (2610bp) protein (870aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Bifidobacterium RepID=R6GNK6_9BIFI
L3_098_220G1_scaffold_186_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12738..13805)
DNA (1068bp) protein (356aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Phenylalanine--tRNA ligase alpha subunit n=8 Tax=Bifidobacterium RepID=E3ER39_BIFBS
pheS; phenylalanyl-tRNA synthetase subunit alpha
L3_098_220G1_scaffold_186_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13890..14729)
DNA (840bp) protein (280aa)
rRNA methylase n=3 Tax=Bifidobacterium RepID=R6HAM9_9BIFI
rRNA methylase {ECO:0000313|EMBL:CDB23272.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
rRNA methylase
L3_098_220G1_scaffold_186_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14899..15660
DNA (762bp) protein (254aa)
ABC transporter ATP-binding protein (EC:3.6.3.42)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXF4_BIFBP
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04687.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_220G1_scaffold_186_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15657..16448
DNA (792bp) protein (264aa)
TIGR00245 family protein n=3 Tax=Bifidobacterium bifidum RepID=E4VAA4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16258.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_098_220G1_scaffold_186_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16509..16826)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CI92_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83768.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
short-chain alcohol dehydrogenase
L3_098_220G1_scaffold_186_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16877..17053)
DNA (177bp) protein (59aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M2M3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83769.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_098_220G1_scaffold_186_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17202..17753
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAA6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50548.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_098_220G1_scaffold_186_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17885..19174)
DNA (1290bp) protein (430aa)
Putative permease n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVG7_BIFBI
Putative purine or uracil transport protein {ECO:0000313|EMBL:BAQ98365.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
pyrP; uracil permease PyrP
L3_098_220G1_scaffold_186_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19332..20144)
DNA (813bp) protein (271aa)
Phosphoglycerate mutase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WII0_BIFBI
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:AFL04693.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_220G1_scaffold_186_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20404..20700
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GNJ7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ERI83773.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_098_220G1_scaffold_186_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20795..21889)
DNA (1095bp) protein (365aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER49_BIFBS
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB23263.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_098_220G1_scaffold_186_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22108..22923)
DNA (816bp) protein (272aa)
HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WII4_BIFBI
ywfK; HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:AFL04697.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_220G1_scaffold_186_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23008..23646)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DQB6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83777.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_098_220G1_scaffold_186_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23690..25234)
DNA (1545bp) protein (515aa)
Family 2 glycosyl transferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2INT3_BIFBI
Family 2 glycosyl transferase {ECO:0000313|EMBL:EKE50420.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
family 2 glycosyl transferase
L3_098_220G1_scaffold_186_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26709..28667
DNA (1959bp) protein (653aa)
Serine-threonine protein kinase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER54_BIFBS
Serine-threonine protein kinase {ECO:0000313|EMBL:ADO53326.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
serine-threonine protein kinase
L3_098_220G1_scaffold_186_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28679..29326)
DNA (648bp) protein (216aa)
Phospholipase/carboxylesterase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSK4_BIFBI
Phospholipase/carboxylesterase {ECO:0000313|EMBL:EKE50418.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
phospholipase/carboxylesterase
L3_098_220G1_scaffold_186_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29706..30131
DNA (426bp) protein (142aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=7 Tax=Bifidobacterium RepID=E3ER56_BIFBS
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_186_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30203..30553)
DNA (351bp) protein (117aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2H8T9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15556.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Displaying items 1-30 of 43 in total

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