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L3_098_220G1_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_228_1
unknown

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1..69
DNA (69bp) protein (23aa)

This feature has no annotations

L3_098_220G1_scaffold_228_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(192..1136)
DNA (945bp) protein (315aa)
tktB; transketolase subunit B (EC:2.2.1.1)
Transketolase, alpha subunit n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TT43_9CLOT
Transketolase, alpha subunit {ECO:0000313|EMBL:EKQ50421.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_098_220G1_scaffold_228_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1136..1957)
DNA (822bp) protein (274aa)
Transketolase domain protein n=2 Tax=Clostridium RepID=A6M2Z7_CLOB8
transketolase domain-containing protein
Transketolase domain protein {ECO:0000313|EMBL:ABR36977.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_098_220G1_scaffold_228_4

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comp(2222..2614)
DNA (393bp) protein (131aa)
mRNA interferase n=4 Tax=Clostridium butyricum RepID=B1QWL4_CLOBU
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:ETJ16610.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transcriptional modulator of MazE/toxin MazF
L3_098_220G1_scaffold_228_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2611..2829)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ02303.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_098_220G1_scaffold_228_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3075..3689)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TH43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ50425.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative secreted protein
L3_098_220G1_scaffold_228_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3758..5263)
DNA (1506bp) protein (502aa)
nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr (EC:4.2.1.136 5.1.99.6)
Nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr {ECO:0000313|EMBL:AGX45277.1}; EC=4.2.1.136 {ECO:0000313|EMBL:AGX45277.1};; EC=5.1.99.6 {ECO:0000313|EMBL:AGX45277.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0F8_CLOSA
L3_098_220G1_scaffold_228_8
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5264..5635)
DNA (372bp) protein (124aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
acpS; holo-[acyl-carrier-protein] synthase AcpS (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUE0_9CLOT
L3_098_220G1_scaffold_228_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5686..6018)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWU4_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45279.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_228_10
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6507..6854)
DNA (348bp) protein (116aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U627_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ssb2; single-stranded DNA-binding protein 1
L3_098_220G1_scaffold_228_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6933..7781)
DNA (849bp) protein (283aa)
Putative ribonuclease-like protein YfkH n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N025_CLOSA
Ribonuclease BN {ECO:0000313|EMBL:KHD15468.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
yfkH; putative ribonuclease-like protein YfkH
L3_098_220G1_scaffold_228_12
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7986..9302)
DNA (1317bp) protein (439aa)
UDP-N-acetyl-D-glucosamine dehydrogenase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FY72_CLOPA
UDP-glucose 6-dehydrogenase
UDP-N-acetyl-D-glucosamine dehydrogenase {ECO:0000313|EMBL:ETD68387.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_098_220G1_scaffold_228_13
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9409..9987)
DNA (579bp) protein (193aa)
wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-D-glucuronate N-acetyltransferase WbpD (EC:2.3.1.-)
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase WbpD {ECO:0000313|EMBL:AGF59283.1}; EC=2.3.1.- {ECO:0000313|EMBL:AGF59283.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase WbpD n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MT47_9CLOT
L3_098_220G1_scaffold_228_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9998..11182)
DNA (1185bp) protein (395aa)
Putative pleiotropic regulatory protein DegT n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9M4_CLOBU
Putative pleiotropic regulatory protein DegT {ECO:0000313|EMBL:EEP55871.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
erythromycin biosynthesis sensory transduction protein eryC1
L3_098_220G1_scaffold_228_15
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11358..13643)
DNA (2286bp) protein (762aa)
Rad3-like DNA helicase (EC:3.6.4.12)
Rad3-like DNA helicase {ECO:0000313|EMBL:AGF59285.1}; EC=3.6.4.12 {ECO:0000313|EMBL:AGF59285.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Rad3-like DNA helicase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M151_9CLOT
L3_098_220G1_scaffold_228_16
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13807..14397)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 5521 RepID=B1QWM9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ94675.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
L3_098_220G1_scaffold_228_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14965..15210
DNA (246bp) protein (82aa)
Transcriptional regulator, AbrB family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0H5_CLOSA
transcriptional regulator, AbrB family
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:AGX45292.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_228_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15282..16127)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
rsmI; ribosomal RNA small subunit methyltransferase I (EC:2.1.1.198)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TH53_9CLOT
L3_098_220G1_scaffold_228_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16130..16882)
DNA (753bp) protein (251aa)
Methyltransferase small n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAR1_9CLOT
Methyltransferase small {ECO:0000313|EMBL:EHJ02320.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
small; methyltransferase Small
L3_098_220G1_scaffold_228_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17060..18358)
DNA (1299bp) protein (433aa)
Cell wall-associated hydrolase, invasion-associated protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUF3_9CLOT
Cell wall-associated hydrolase, invasion-associated protein {ECO:0000313|EMBL:EKQ50442.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
protein P54
L3_098_220G1_scaffold_228_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18757..19410
DNA (654bp) protein (218aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX8_CLOBU
HAD family hydrolase {ECO:0000313|EMBL:KHD15457.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_098_220G1_scaffold_228_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19491..20237)
DNA (747bp) protein (249aa)
prsA2; foldase protein PrsA (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Foldase protein PrsA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXM3_CLOSA
L3_098_220G1_scaffold_228_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20397..21074
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ung; uracil-DNA glycosylase Ung (EC:3.2.2.27)
Uracil-DNA glycosylase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAR5_9CLOT
L3_098_220G1_scaffold_228_24

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21100..21507
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8KHV8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16633.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_098_220G1_scaffold_228_25
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22164..23135)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JN75_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64278.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
putative dehydrogenase
L3_098_220G1_scaffold_228_26
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23217..23387)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CFF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR28008.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
putative membrane protein
L3_098_220G1_scaffold_228_27
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23536..24273
DNA (738bp) protein (246aa)
cobB3; NAD-dependent protein deacetylase (EC:3.5.1.-)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968, ECO:0000313|EMBL:CDM69391.1}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968, ECO:0000313|EMBL:CDM69391.1};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NAD-dependent protein deacetylase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHV3_CLOBU
L3_098_220G1_scaffold_228_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24395..24868
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXM7_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45303.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_228_29
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25264..26499)
DNA (1236bp) protein (412aa)
Putative competence-damage inducible protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U640_9CLOT
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
competence damage-inducible protein A
L3_098_220G1_scaffold_228_30
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26944..27897)
DNA (954bp) protein (318aa)
glcK4; glucokinase GlcK (EC:2.7.1.2)
Glucokinase GlcK {ECO:0000313|EMBL:AGF59299.1}; EC=2.7.1.2 {ECO:0000313|EMBL:AGF59299.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Glucokinase GlcK n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MN52_9CLOT
Displaying items 1-30 of 37 in total

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