ggKbase home page

L3_098_220G1_scaffold_359

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_359_1
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78..380)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A8B9_BIFAD
transposase
Transposase {ECO:0000313|EMBL:AIZ14466.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L3_098_220G1_scaffold_359_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(540..1490)
DNA (951bp) protein (317aa)
Choloylglycine hydrolase n=2 Tax=Bifidobacterium bifidum RepID=E3EM77_BIFBS
cbh; Choloylglycine hydrolase
Choloylglycine hydrolase {ECO:0000313|EMBL:EKF16757.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_098_220G1_scaffold_359_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1624..2259)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BVU3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16758.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_098_220G1_scaffold_359_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2357..3229)
DNA (873bp) protein (291aa)
Hydrolase, carbon-nitrogen family n=2 Tax=Bifidobacterium RepID=U2CCQ2_BIFBI
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:ERI82310.1}; Putative hydrolase {ECO:0000313|EMBL:BAQ98060.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
carbon-nitrogen hydrolase
L3_098_220G1_scaffold_359_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3300..4289)
DNA (990bp) protein (330aa)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI42909.1}; EC=3.6.3.28 {ECO:0000313|EMBL:KFI42909.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ABC transporter ATP-binding protein (EC:3.6.3.25)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAY3_9BIFI
L3_098_220G1_scaffold_359_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4319..5569)
DNA (1251bp) protein (417aa)
Glycosyltransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM73_BIFBS
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:ADO53080.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_359_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5719..6192)
DNA (474bp) protein (158aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WHS8_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42907.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_098_220G1_scaffold_359_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6555..8006)
DNA (1452bp) protein (484aa)
gltD; glutamate synthase small chain GltD (EC:1.4.1.14)
GltD Glutamate synthase [NADPH] small chain n=6 Tax=Bifidobacterium RepID=E4P1F5_BIFBP
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFR50237.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_098_220G1_scaffold_359_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8008..12594)
DNA (4587bp) protein (1529aa)
gltB; glutamate synthase large chain GltB (EC:1.4.7.1)
Glutamate synthase [NADPH], large subunit {ECO:0000313|EMBL:EFR50236.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EFR50236.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
GltB Glutamate synthase [NADPH] large chain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1F4_BIFBP
L3_098_220G1_scaffold_359_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12859..14949)
DNA (2091bp) protein (697aa)
Translation elongation factor n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1F3_BIFBP
translation elongation factor
Translation elongation factor {ECO:0000313|EMBL:CDB23341.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15146..16714)
DNA (1569bp) protein (523aa)
aminotransferase (EC:2.6.1.1)
Aminotransferase n=2 Tax=Bifidobacterium bifidum RepID=E4P1F2_BIFBP
Aminotransferase {ECO:0000313|EMBL:CDB23338.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17033..17173
DNA (141bp) protein (47aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2HTC9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53074.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_359_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17230..17673)
DNA (444bp) protein (148aa)
hemN; coproporphyrinogen oxidase (NAD) (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPY9_9BIFI
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDB23331.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17791..18624)
DNA (834bp) protein (278aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPY9_9BIFI
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDB23331.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hemN; oxygen-independent coproporphyrinogen III oxidase
L3_098_220G1_scaffold_359_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18639..20015)
DNA (1377bp) protein (459aa)
lepA; GTP-binding protein LepA (EC:2.7.7.4)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Elongation factor 4 n=2 Tax=Bifidobacterium bifidum RepID=E3EM65_BIFBS
L3_098_220G1_scaffold_359_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20036..20431)
DNA (396bp) protein (132aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Elongation factor 4 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHS1_BIFBI
lepA; GTP-binding protein lepA
L3_098_220G1_scaffold_359_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20640..20900
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=7 Tax=Bifidobacterium RepID=E3EM64_BIFBS
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_098_220G1_scaffold_359_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21038..21796)
DNA (759bp) protein (253aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=E4V9D7_BIFBI
hypothetical protein
Conserved hypothetical membrane spanning protein in uncharacterized protein family UPF0126 {ECO:0000313|EMBL:CDB23325.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22034..22444)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1E7_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23323.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22500..22772)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1E6_BIFBP
putative phosphoesterase or phosphohydrolase
Uncharacterized protein {ECO:0000313|EMBL:KFI42896.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_098_220G1_scaffold_359_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22977..24104)
DNA (1128bp) protein (376aa)
ilvE; branched-chain amino acid aminotransferase IlvE (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=5 Tax=Bifidobacterium bifidum RepID=E3EM61_BIFBS
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ADO53068.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_359_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24320..24946)
DNA (627bp) protein (209aa)
50S ribosomal protein L25 n=3 Tax=Bifidobacterium bifidum RepID=E4P1E4_BIFBP
rplY; 50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_098_220G1_scaffold_359_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25261..26253
DNA (993bp) protein (331aa)
Alpha/beta hydrolase n=2 Tax=Bifidobacterium bifidum RepID=E4P1E3_BIFBP
alpha/beta hydrolase
Uncharacterized protein {ECO:0000313|EMBL:ADO53066.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_220G1_scaffold_359_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26394..27839)
DNA (1446bp) protein (482aa)
pntB; NAD(P) transhydrogenase subunit beta (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
NAD(P) transhydrogenase subunit beta n=6 Tax=Bifidobacterium RepID=E4P1E2_BIFBP
L3_098_220G1_scaffold_359_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27839..28153)
DNA (315bp) protein (105aa)
pntAB; NAD(P) transhydrogenase subunit alpha part 2 (EC:1.6.1.2)
NAD(P) transhydrogenase alpha2 subunit n=7 Tax=Bifidobacterium RepID=E3EM57_BIFBS
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:EKF15071.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_098_220G1_scaffold_359_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28157..29296)
DNA (1140bp) protein (380aa)
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha subunit n=8 Tax=Bifidobacterium RepID=E3EM56_BIFBS
PntA1 NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:CDB23312.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29516..31552
DNA (2037bp) protein (679aa)
Long-chain-fatty-acid--CoA ligase n=2 Tax=Bifidobacterium RepID=R6GPX1_9BIFI
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDB23311.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
fadD3; long-chain-fatty-acid--CoA ligase
L3_098_220G1_scaffold_359_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31653..32663)
DNA (1011bp) protein (337aa)
GTPase Era n=6 Tax=Bifidobacterium RepID=I3WHQ9_BIFBI
era; GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_220G1_scaffold_359_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32712..34130)
DNA (1419bp) protein (473aa)
Hemolysin-like protein n=4 Tax=Bifidobacterium bifidum RepID=I3WHQ8_BIFBI
hypothetical protein
CBS domain protein {ECO:0000313|EMBL:ERI82336.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98036.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_098_220G1_scaffold_359_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34208..34753)
DNA (546bp) protein (182aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Endoribonuclease YbeY n=8 Tax=Bifidobacterium RepID=E3EM52_BIFBS
putative metalloprotease
Displaying items 1-30 of 73 in total

View Taxonomy