ggKbase home page

L3_098_220G1_scaffold_388

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_388_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

328..1227
DNA (900bp) protein (300aa)
xylanase deacetylase n=1 Tax=Clostridium beijerinckii RepID=UPI000302D609
polysaccharide deacetylase
Xylanase deacetylase {ECO:0000313|EMBL:ETD66564.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_098_220G1_scaffold_388_2
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1527..2438
DNA (912bp) protein (304aa)
Polysaccharide deacetylase n=2 Tax=Clostridium RepID=A6LUV4_CLOB8
polysaccharide deacetylase
Xylanase deacetylase {ECO:0000313|EMBL:ETD66564.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_098_220G1_scaffold_388_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2782..4161
DNA (1380bp) protein (460aa)
Peptidase U62, modulator of DNA gyrase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LQC7_CLOB8
C69 family peptidase
Peptidase U62, modulator of DNA gyrase {ECO:0000313|EMBL:ABR32557.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_098_220G1_scaffold_388_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4164..5507
DNA (1344bp) protein (448aa)
Putative Zn-dependent protease-like protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TU64_9CLOT
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EKQ50886.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
TldD/PmbA family protein
L3_098_220G1_scaffold_388_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5581..6408)
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R2E6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP55595.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L3_098_220G1_scaffold_388_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6556..7518
DNA (963bp) protein (321aa)
Thioredoxin reductase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TU56_9CLOT
Thioredoxin reductase {ECO:0000313|EMBL:EKQ50876.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain protein
L3_098_220G1_scaffold_388_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7534..8100)
DNA (567bp) protein (189aa)
Lipolytic protein G-D-S-L family n=1 Tax=Clostridium sp. DL-VIII RepID=G7LZ46_9CLOT
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:EHI97398.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
lipolytic protein G-D-S-L
L3_098_220G1_scaffold_388_8

Not on your lists

comp(8117..8740)
DNA (624bp) protein (208aa)
Endodeoxyribonuclease, RusA family protein n=2 Tax=Clostridium butyricum RepID=B1R2E9_CLOBU
Endodeoxyribonuclease, RusA family protein {ECO:0000313|EMBL:ETJ16425.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
endodeoxyribonuclease RusA family
L3_098_220G1_scaffold_388_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8962..9981
DNA (1020bp) protein (340aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=3 Tax=Clostridium butyricum RepID=B1R2F0_CLOBU
gcp; tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
L3_098_220G1_scaffold_388_10
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9991..11004
DNA (1014bp) protein (338aa)
Alpha/beta hydrolase fold protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LZ49_9CLOT
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EHI97401.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
L3_098_220G1_scaffold_388_11
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11202..12425
DNA (1224bp) protein (408aa)
2-alkenal reductase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G069_CLOPA
2-alkenal reductase {ECO:0000313|EMBL:ETD69077.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
2-alkenal reductase
L3_098_220G1_scaffold_388_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12529..12834
DNA (306bp) protein (102aa)
Phosphotransferase system cellobiose-specific component IIA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TI04_9CLOT
Phosphotransferase system cellobiose-specific component IIA {ECO:0000313|EMBL:EKQ50870.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
L3_098_220G1_scaffold_388_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13018..13404
DNA (387bp) protein (129aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R2F5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84984.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L3_098_220G1_scaffold_388_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13533..14609
DNA (1077bp) protein (359aa)
Ethanolamine transporter n=2 Tax=Clostridium botulinum B RepID=B2TJK5_CLOBB
ethanolamine transporter
Ethanolamine permease {ECO:0000313|EMBL:CDH89395.1}; Ethanolamine transporter {ECO:0000313|EMBL:ACD24051.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_098_220G1_scaffold_388_15
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14624..15748
DNA (1125bp) protein (375aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FXT0_CLOPA
ABC-type sugar transport system periplasmic component-like protein {ECO:0000313|EMBL:AJG97083.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
ABC-type sugar transport system periplasmic component-like protein
L3_098_220G1_scaffold_388_16
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15768..16898)
DNA (1131bp) protein (377aa)
Glycosyl transferase group 1 n=1 Tax=Clostridium sp. DL-VIII RepID=G7LZ52_9CLOT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EHI97404.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
glycosyl transferase, group 1
L3_098_220G1_scaffold_388_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17023..18039
DNA (1017bp) protein (339aa)
Spore coat protein CotS n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ10_CLOSA
cotS; spore coat protein CotS
Spore coat protein CotS {ECO:0000313|EMBL:AGX41502.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_388_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17984..18790
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLV6_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41503.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_388_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18817..19872
DNA (1056bp) protein (352aa)
Spore coat protein, CotS family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML41_CLOSA
spore coat protein, CotS family
Spore coat protein, CotS family {ECO:0000313|EMBL:AGX41504.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying 19 items

View Taxonomy