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L3_098_220G1_scaffold_399

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_399_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(176..1165)
DNA (990bp) protein (330aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ANJ9_CLOBU
integral membrane sensor signal transduction histidine kinase
L3_098_220G1_scaffold_399_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1162..1833)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGS8_CLOBU
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEP54337.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
yxdJ; transcriptional regulatory protein YxdJ
L3_098_220G1_scaffold_399_3
unknown

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2034..2327
DNA (294bp) protein (98aa)

This feature has no annotations

L3_098_220G1_scaffold_399_4
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2381..3148)
DNA (768bp) protein (256aa)
Transcriptional regulator n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KG20_CLOPA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGY74294.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_098_220G1_scaffold_399_5
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3368..3919
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VD200 RepID=J8NBC8_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EJR97288.1}; TaxID=1053244 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD200.;"
amino acid permease
L3_098_220G1_scaffold_399_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4309..5649)
DNA (1341bp) protein (447aa)
MATE efflux family protein n=4 Tax=Clostridium difficile RepID=T3SRG9_CLODI
MATE efflux family protein
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CDS94920.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_098_220G1_scaffold_399_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5762..6544)
DNA (783bp) protein (261aa)
iron-dicitrate ABC transporter ATP-binding protein n=1 Tax=Clostridium botulinum RepID=UPI0002ED9249
Iron-dicitrate transporter ATP-binding subunit {ECO:0000313|EMBL:KJU72273.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
ABC transporter family protein
L3_098_220G1_scaffold_399_8
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6572..7579)
DNA (1008bp) protein (336aa)
FecCD transport family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CS53_CLOSO
Ferrichrome transport system permease FhuG {ECO:0000313|EMBL:CEO25715.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
ferrichrome ABC transporter permease FhuG
L3_098_220G1_scaffold_399_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7579..8595)
DNA (1017bp) protein (339aa)
Putative ferrichrome ABC transporter, permease protein FhuB n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SUT7_CLOPS
fhuB; iron compound ABC transporter permease
Putative ferrichrome ABC transporter, permease protein FhuB {ECO:0000313|EMBL:ABG85885.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_098_220G1_scaffold_399_10
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8722..9663)
DNA (942bp) protein (314aa)
Periplasmic binding family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VSP0_CLOBI
Periplasmic binding family protein {ECO:0000313|EMBL:EQK43702.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
fhuD; ferrichrome ABC transporter substrate-binding protein
L3_098_220G1_scaffold_399_11
unknown

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9729..10001
DNA (273bp) protein (91aa)

This feature has no annotations

L3_098_220G1_scaffold_399_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9878..10591)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ALP4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD15919.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_098_220G1_scaffold_399_13
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10732..11562)
DNA (831bp) protein (277aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D458_9CLOT
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EEG53869.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
alpha/beta hydrolase superfamily
L3_098_220G1_scaffold_399_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11722..12414)
DNA (693bp) protein (231aa)
XRE family transcriptional regulator n=1 Tax=Clostridium beijerinckii RepID=UPI00031DD3B3
XRE family transcriptional regulator {ECO:0000313|EMBL:AJH00613.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
XRE family transcriptional regulator
L3_098_220G1_scaffold_399_15
unknown

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comp(12507..12710)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_098_220G1_scaffold_399_16
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12786..13442
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RMT9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM69946.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_098_220G1_scaffold_399_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13463..13969
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QZR0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP53306.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L3_098_220G1_scaffold_399_18
unknown

Not on your lists

comp(14032..14451)
DNA (420bp) protein (140aa)

This feature has no annotations

L3_098_220G1_scaffold_399_19

Not on your lists

comp(14906..15439)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGD5_CLOBU
Phosphatidylglycerophosphatase B {ECO:0000313|EMBL:ETJ16703.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
PAP2 superfamily protein
L3_098_220G1_scaffold_399_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15533..17722)
DNA (2190bp) protein (730aa)
UPI0003D5B5EE related cluster n=1 Tax=unknown RepID=UPI0003D5B5EE
Membrane protein {ECO:0000313|EMBL:KHD15917.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
phage infection protein
L3_098_220G1_scaffold_399_21
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17944..18432
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TYK6_9CLOT
Acetyltransferase {ECO:0000313|EMBL:EKQ52237.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_098_220G1_scaffold_399_22
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18528..19262)
DNA (735bp) protein (245aa)
Uncharacterized protein n=2 Tax=Blautia RepID=R5BRU7_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG50137.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
hypothetical protein
Displaying 22 items

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