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L3_098_220G1_scaffold_413

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_220G1_scaffold_413_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(432..1193)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TZG8_9CLOT
imidazole glycerol phosphate synthase subunit HisF
L3_098_220G1_scaffold_413_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1211..1933)
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TN79_9CLOT
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
L3_098_220G1_scaffold_413_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1927..2577)
DNA (651bp) protein (217aa)
hisH1; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXB4_CLOSA
L3_098_220G1_scaffold_413_4
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2663..3247)
DNA (585bp) protein (195aa)
hisB; imidazoleglycerol-phosphate dehydratase HisB (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00218099}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00263879};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MKH4_9CLOT
L3_098_220G1_scaffold_413_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3268..4305)
DNA (1038bp) protein (346aa)
hisC2; histidinol-phosphate aminotransferase HisC (EC:2.6.1.9)
Histidinol-phosphate aminotransferase HisC {ECO:0000313|EMBL:AGX44099.1}; EC=2.6.1.9 {ECO:0000313|EMBL:AGX44099.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Histidinol-phosphate aminotransferase HisC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTI4_CLOSA
L3_098_220G1_scaffold_413_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4305..5591)
DNA (1287bp) protein (429aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Histidinol dehydrogenase n=2 Tax=Clostridium butyricum RepID=B1QTP0_CLOBU
histidinol dehydrogenase
L3_098_220G1_scaffold_413_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5736..6365)
DNA (630bp) protein (210aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ATP phosphoribosyltransferase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M289_9CLOT
ATP phosphoribosyltransferase
L3_098_220G1_scaffold_413_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6370..7515)
DNA (1146bp) protein (382aa)
ATP phosphoribosyltransferase n=1 Tax=Clostridium beijerinckii RepID=UPI0002F6D49A
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
histidine--tRNA ligase
L3_098_220G1_scaffold_413_9
unknown

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comp(7873..7995)
DNA (123bp) protein (41aa)

This feature has no annotations

L3_098_220G1_scaffold_413_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8124..9281)
DNA (1158bp) protein (386aa)
thiI; tRNA sulfurtransferase ThiI (EC:2.8.1.4)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTI8_CLOSA
L3_098_220G1_scaffold_413_11
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9331..10485)
DNA (1155bp) protein (385aa)
iscS2; cysteine desulfurase IscS (EC:2.8.1.7)
Cysteine desulfurase family protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TN71_9CLOT
Cysteine desulfurase family protein {ECO:0000313|EMBL:EKQ53295.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_098_220G1_scaffold_413_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10769..11248)
DNA (480bp) protein (160aa)
methionine sulfoxide reductase A (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000255|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000255|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000255|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000255|HAMAP-Rule:MF_01401}; Short=Peptide Met(O) reductase {ECO:0000255|HAMAP-Rule:MF_01401};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=MSRA_CLOPE
L3_098_220G1_scaffold_413_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11348..12256)
DNA (909bp) protein (303aa)
6-phosphogluconate dehydrogenase, NAD-binding n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LT11_CLOB8
6-phosphogluconate dehydrogenase, NAD-binding protein
6-phosphogluconate dehydrogenase, NAD-binding {ECO:0000313|EMBL:ABR33491.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_098_220G1_scaffold_413_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12419..13435)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MU47_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX44115.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_413_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13771..14208)
DNA (438bp) protein (146aa)
UPF0735 ACT domain-containing protein CLSA_c31500 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWV4_CLOSA
ACT domain-containing protein
UPF0735 ACT domain-containing protein CLSA_c31500 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_220G1_scaffold_413_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14208..15107)
DNA (900bp) protein (300aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
thrB; homoserine kinase ThrB (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K8D9_CLOBU
L3_098_220G1_scaffold_413_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15128..16582)
DNA (1455bp) protein (485aa)
thrC; threonine synthase ThrC (EC:4.2.3.1)
Threonine synthase ThrC {ECO:0000313|EMBL:AGX44118.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AGX44118.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Threonine synthase ThrC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MUB4_CLOSA
L3_098_220G1_scaffold_413_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16831..17787)
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A6LSZ2_CLOB8
Uncharacterized protein {ECO:0000313|EMBL:KHD16094.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_098_220G1_scaffold_413_19
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18060..19034
DNA (975bp) protein (325aa)
Esterase/lipase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MU52_CLOSA
Lipase {ECO:0000313|EMBL:AJG98035.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
esterase/lipase
Displaying 19 items

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