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L3_098_332G1_scaffold_136

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_332G1_scaffold_136_1
unknown

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comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

L3_098_332G1_scaffold_136_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(151..933)
DNA (783bp) protein (261aa)
trpA; tryptophan synthase alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Tryptophan synthase alpha chain n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRU2_CLOSA
L3_098_332G1_scaffold_136_3
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(926..2104)
DNA (1179bp) protein (393aa)
trpB; tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Tryptophan synthase beta chain n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1LUR3_9CLOT
L3_098_332G1_scaffold_136_4
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2207..2893)
DNA (687bp) protein (229aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=2 Tax=Clostridium RepID=TRPF_CLOB8
phosphoribosylanthranilate isomerase
L3_098_332G1_scaffold_136_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2953..3765)
DNA (813bp) protein (271aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
trpC; indole-3-glycerol phosphate synthase TrpC (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M325_9CLOT
L3_098_332G1_scaffold_136_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3788..4795)
DNA (1008bp) protein (336aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
trpD; anthranilate phosphoribosyltransferase TrpD (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z9R2_CLOBU
L3_098_332G1_scaffold_136_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4824..5411)
DNA (588bp) protein (196aa)
Anthranilate synthase, amidotransferase component {ECO:0000313|EMBL:KJZ86844.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KJZ86844.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pabA; para-aminobenzoate synthase glutamine amidotransferase component II (EC:2.6.1.85)
Anthranilate synthase component II n=2 Tax=Clostridium butyricum RepID=M8K5Q2_CLOBU
L3_098_332G1_scaffold_136_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5408..6802)
DNA (1395bp) protein (465aa)
Anthranilate synthase, component 1 {ECO:0000313|EMBL:EEP53329.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EEP53329.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
trpE2; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 n=2 Tax=Clostridium butyricum RepID=B1QSC2_CLOBU
L3_098_332G1_scaffold_136_9
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7429..7902
DNA (474bp) protein (158aa)
Hydrolase HD superfamily n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NSL4_9FIRM
Hydrolase HD superfamily {ECO:0000313|EMBL:CCZ05114.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L3_098_332G1_scaffold_136_10
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7976..8875)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FRA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB14580.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_098_332G1_scaffold_136_11
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9009..9461)
DNA (453bp) protein (151aa)
Acetyltransferase (GNAT) family protein n=3 Tax=Clostridium botulinum RepID=A5I409_CLOBH
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AKA70932.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_098_332G1_scaffold_136_12
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9881..10051)
DNA (171bp) protein (57aa)
BFD-like [2Fe-2S] binding domain protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CTF7_CLOSO
BFD (2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:CEP80093.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
BFD-like iron-sulfur cluster-binding protein
L3_098_332G1_scaffold_136_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10110..10292)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JKE5_CLOBU
Ferredoxin {ECO:0000313|EMBL:KJZ86847.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Ferredoxin
L3_098_332G1_scaffold_136_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10425..13022)
DNA (2598bp) protein (866aa)
AAA+ family ATPase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UC59_9CLOT
AAA+ family ATPase {ECO:0000313|EMBL:EKQ58239.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
spoVK; stage V sporulation protein K
L3_098_332G1_scaffold_136_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13192..13815)
DNA (624bp) protein (208aa)
pspA; phosphoserine phosphatase 1 (EC:3.1.3.3)
Fructose-2,6-bisphosphatase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8K8_9CLOT
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:EKQ58237.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_098_332G1_scaffold_136_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13883..15136)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS35_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43343.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_098_332G1_scaffold_136_17
unknown

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comp(15379..15534)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_098_332G1_scaffold_136_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15700..17160)
DNA (1461bp) protein (487aa)
LexA repressor {ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.- {ECO:0000256|SAAS:SAAS00273293};; EC=3.4.21.88 {ECO:0000256|SAAS:SAAS00008054};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
lexA3; LexA repressor (EC:3.4.21.88)
SOS regulatory protein LexA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U656_9CLOT
L3_098_332G1_scaffold_136_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17384..18553
DNA (1170bp) protein (390aa)
LL-diaminopimelate aminotransferase {ECO:0000313|EMBL:EHI99363.1}; EC=2.6.1.83 {ECO:0000313|EMBL:EHI99363.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
dapL; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M2L4_9CLOT
L3_098_332G1_scaffold_136_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18636..18953)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TMU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ53155.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_098_332G1_scaffold_136_21
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19046..19870)
DNA (825bp) protein (275aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M7T5_9CLOT
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABR33949.1}; Flags: Precursor;; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_098_332G1_scaffold_136_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20213..20881
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UX22_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:EES49661.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hypothetical protein
L3_098_332G1_scaffold_136_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20942..22102)
DNA (1161bp) protein (387aa)
Transcriptional regulator n=2 Tax=Clostridium botulinum B RepID=B2TKF5_CLOBB
transcriptional regulator
MerR-family transcriptional regulator {ECO:0000313|EMBL:CDH90508.1}; Transcriptional regulator {ECO:0000313|EMBL:ACD22256.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_098_332G1_scaffold_136_24
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22323..23501)
DNA (1179bp) protein (393aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G719_CLOPA
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:ETD71886.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
DegT/DnrJ/EryC1/StrS aminotransferase
L3_098_332G1_scaffold_136_25
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23826..24488)
DNA (663bp) protein (221aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UC47_9CLOT
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:EKQ58179.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
haloacid dehalogenase superfamily enzyme, subfamily IA
L3_098_332G1_scaffold_136_26
unknown

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comp(24460..24609)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_098_332G1_scaffold_136_27
unknown

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comp(24628..24807)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_098_332G1_scaffold_136_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25018..25866)
DNA (849bp) protein (283aa)
rlmA; 23S rRNA (guanine(745)-N(1))-methyltransferase RlmA (EC:2.1.1.187)
UPI0003D5DF89 related cluster n=1 Tax=unknown RepID=UPI0003D5DF89
rRNA (Guanine-N1)-methyltransferase {ECO:0000313|EMBL:KHD16168.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L3_098_332G1_scaffold_136_29
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26166..27605)
DNA (1440bp) protein (480aa)
Aryl-phospho-beta-D-glucosidase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FST1_CLOPA
glycoside hydrolase
Glycoside hydrolase family protein {ECO:0000313|EMBL:AJH01903.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_098_332G1_scaffold_136_30
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27757..28602)
DNA (846bp) protein (282aa)
Transcriptional regulator, RpiR family n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MGP0_9CLOT
transcriptional regulator, RpiR family
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:AGF55513.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Displaying items 1-30 of 75 in total

View Taxonomy