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L3_098_332G1_scaffold_311

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_332G1_scaffold_311_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..521
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1G2_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEI81453.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_098_332G1_scaffold_311_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(543..1802)
DNA (1260bp) protein (420aa)
Putative transposase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM79_BIFBS
Putative transposase {ECO:0000313|EMBL:CDB23194.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
transposase
L3_098_332G1_scaffold_311_3
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2667..3359
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GQX5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY19648.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
hypothetical protein
L3_098_332G1_scaffold_311_4
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3613..3708)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GV31_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY19649.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
L3_098_332G1_scaffold_311_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4339..7563)
DNA (3225bp) protein (1075aa)
Type III restriction enzyme n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPK4_9BIFI
Type III restriction enzyme {ECO:0000313|EMBL:CDB23196.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
restriction endonuclease
L3_098_332G1_scaffold_311_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7574..9496)
DNA (1923bp) protein (641aa)
Adenine specific DNA methylase Mod n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAE8_9BIFI
Adenine specific DNA methylase Mod {ECO:0000313|EMBL:CDB23197.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
DNA methyltransferase
L3_098_332G1_scaffold_311_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9493..10209)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCK2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23198.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_098_332G1_scaffold_311_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10206..13547)
DNA (3342bp) protein (1114aa)
Helicase domain-containing protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNE7_9BIFI
Helicase domain-containing protein {ECO:0000313|EMBL:CDB23199.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
helicase
L3_098_332G1_scaffold_311_9
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13623..14969
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EAX9_BIFLI
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29345.1}; Uncharacterized protein {ECO:0000313|EMBL:KFI66446.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
hypothetical protein
L3_098_332G1_scaffold_311_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15177..17654
DNA (2478bp) protein (826aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DLG7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82382.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_098_332G1_scaffold_311_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17720..17917
DNA (198bp) protein (66aa)
Putative phage-ralated protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHU2_BIFBI
putative phage-ralated protein
Putative phage-ralated protein {ECO:0000313|EMBL:AFL04455.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_332G1_scaffold_311_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17995..18678)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM82_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53089.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_332G1_scaffold_311_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18739..18975)
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2BW05_BIFBI
RarD Chloramphenicol-sensitive protein {ECO:0000313|EMBL:KFI42926.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_098_332G1_scaffold_311_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19080..20000)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CED2_BIFBI
Putative lipase/esterase {ECO:0000313|EMBL:BAQ98079.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI82378.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
lipase
L3_098_332G1_scaffold_311_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20241..21341
DNA (1101bp) protein (367aa)
tRNA (Adenine-N(1)-)-methyl transferase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHU6_BIFBI
trmI; tRNA (adenine-N(1)-)-methyl transferase
tRNA (Adenine-N(1)-)-methyl transferase {ECO:0000313|EMBL:AFL04459.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_332G1_scaffold_311_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21461..22018
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHU7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04460.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_098_332G1_scaffold_311_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22178..24484
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V9M8_BIFBI
metE; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
L3_098_332G1_scaffold_311_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24627..25475
DNA (849bp) protein (283aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM88_BIFBS
metF; Methylenetetrahydrofolate reductase
L3_098_332G1_scaffold_311_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25592..25924)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM89_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53096.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_332G1_scaffold_311_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26006..29104
DNA (3099bp) protein (1033aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM90_BIFBS
glnE; glutamate-ammonia-ligase adenylyltransferase
L3_098_332G1_scaffold_311_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29212..30207
DNA (996bp) protein (332aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Aspartate carbamoyltransferase n=2 Tax=Bifidobacterium bifidum RepID=U2DTD5_BIFBI
pyrB; aspartate carbamoyltransferase
L3_098_332G1_scaffold_311_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30207..30626
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory subunit 1 n=8 Tax=Bifidobacterium RepID=E3EM92_BIFBS
pyrI; aspartate carbamoyl transferase regulatory subunit
Aspartate carbamoyltransferase regulatory subunit 1 {ECO:0000313|EMBL:CDB22908.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_098_332G1_scaffold_311_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30735..32159
DNA (1425bp) protein (475aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Dihydroorotase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ3_BIFBS
pyrC; dihydroorotase
L3_098_332G1_scaffold_311_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32230..33195
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ4_BIFBS
pyrF1; Orotidine 5'-phosphate decarboxylase
L3_098_332G1_scaffold_311_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33328..34158
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HW91_BIFBI
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:EKE50697.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pyrK; dihydroorotate dehydrogenase electron transfer subunit
L3_098_332G1_scaffold_311_26
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34161..35108
DNA (948bp) protein (316aa)
pyrD; dihydroorotate dehydrogenase, catalytic subunit pyrD (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWU4_BIFBP
L3_098_332G1_scaffold_311_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35130..35828
DNA (699bp) protein (233aa)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Orotate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4NWU5_BIFBP
L3_098_332G1_scaffold_311_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35979..36122
DNA (144bp) protein (48aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium bifidum RepID=E4NWU6_BIFBP
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ADO53105.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_098_332G1_scaffold_311_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36192..37235
DNA (1044bp) protein (348aa)
Adh Alcohol dehydrogenase {ECO:0000313|EMBL:KFI43000.1}; EC=1.1.1.284 {ECO:0000313|EMBL:KFI43000.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
adh; alcohol dehydrogenase (EC:1.1.1.1)
GroES-like protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXU3_BIFBI
L3_098_332G1_scaffold_311_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37425..38639)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04474.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 57 in total

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