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L3_098_332G1_scaffold_279

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_332G1_scaffold_279_1
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(195..1166)
DNA (972bp) protein (324aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A0_9LACO
L3_098_332G1_scaffold_279_2
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1178..2077)
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
tRNA pseudouridine synthase B n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A1_9LACO
tRNA pseudouridine synthase B
L3_098_332G1_scaffold_279_3
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2150..2509)
DNA (360bp) protein (120aa)
Ribosome-binding factor A n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A2_9LACO
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
rbfA; ribosome-binding factor A
L3_098_332G1_scaffold_279_4
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2523..4805)
DNA (2283bp) protein (761aa)
Translation initiation factor IF-2 n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A3_9LACO
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
infB; translation initiation factor IF-2
L3_098_332G1_scaffold_279_5
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(4819..5133)
DNA (315bp) protein (105aa)
Ribosomal protein L7Ae n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A4_9LACO
Ribosomal protein L7Ae {ECO:0000313|EMBL:EFQ53725.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
50S ribosomal protein L7/L12
L3_098_332G1_scaffold_279_6
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5120..5404)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Lactobacillus oris RepID=E3C6A5_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EFQ53735.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
nucleic-acid-binding protein implicated in transcription termination
L3_098_332G1_scaffold_279_7
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5446..6642)
DNA (1197bp) protein (399aa)
Transcription termination factor NusA n=2 Tax=Lactobacillus oris RepID=E3C6A6_9LACO
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
transcription termination-antitermination factor
L3_098_332G1_scaffold_279_8
Lactobacillus antri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6661..7176)
DNA (516bp) protein (172aa)
Ribosome maturation factor RimP n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7X6_9LACO
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=525309 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus antri DSM 16041.;"
ribosome maturation protein RimP
L3_098_332G1_scaffold_279_9
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7241..8512)
DNA (1272bp) protein (424aa)
Amino acid permease n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A8_9LACO
Amino acid permease {ECO:0000313|EMBL:EFQ53720.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
amino acid permease
L3_098_332G1_scaffold_279_10
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8685..11789)
DNA (3105bp) protein (1035aa)
Exonuclease SbcCD, C subunit n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6A9_9LACO
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EFQ53705.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
chromosome segregation protein SMC
L3_098_332G1_scaffold_279_11
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11789..12907)
DNA (1119bp) protein (373aa)
sbcD; exonuclease SbcD (EC:3.1.11.-)
Exonuclease SbcCD, D subunit n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B0_9LACO
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EFQ53694.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
L3_098_332G1_scaffold_279_12
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13170..17504)
DNA (4335bp) protein (1445aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B1_9LACO
L3_098_332G1_scaffold_279_13
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(17572..19308)
DNA (1737bp) protein (579aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011651};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Proline--tRNA ligase n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B2_9LACO
prolyl-tRNA synthase
L3_098_332G1_scaffold_279_14
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19328..20602)
DNA (1275bp) protein (425aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
RIP metalloprotease RseP n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B3_9LACO
membrane-associated zinc metalloprotease
L3_098_332G1_scaffold_279_15
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20622..21407)
DNA (786bp) protein (262aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Phosphatidate cytidylyltransferase n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B4_9LACO
phosphatidate cytidylyltransferase
L3_098_332G1_scaffold_279_16
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21422..22186)
DNA (765bp) protein (255aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
UDP pyrophosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B5_9LACO
L3_098_332G1_scaffold_279_17
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22468..23028)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B6_9LACO
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
frr; ribosome recycling factor
L3_098_332G1_scaffold_279_18
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23031..23753)
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Uridylate kinase n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6B7_9LACO
pyrH; uridylate kinase
L3_098_332G1_scaffold_279_19
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23827..24702)
DNA (876bp) protein (292aa)
Elongation factor Ts n=2 Tax=Lactobacillus oris RepID=E3C6B8_9LACO
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
tsf; elongation factor Ts
L3_098_332G1_scaffold_279_20
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(24810..25598)
DNA (789bp) protein (263aa)
30S ribosomal protein S2 n=2 Tax=Lactobacillus oris RepID=E3C6B9_9LACO
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
rpsB; 30S ribosomal protein S2
L3_098_332G1_scaffold_279_21
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25769..26074)
DNA (306bp) protein (102aa)
GIY-YIG catalytic domain protein n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6C0_9LACO
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EFQ53740.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
yazA; endo/exonuclease amino terminal GIY-YIG domain-containing protein
L3_098_332G1_scaffold_279_22
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26061..26822)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6C1_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EFQ53721.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
O-methyltransferase
L3_098_332G1_scaffold_279_23
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26906..27544
DNA (639bp) protein (213aa)
Acyltransferase n=2 Tax=Lactobacillus oris RepID=F9JGQ5_9LACO
Acyltransferase {ECO:0000313|EMBL:EFQ53697.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
L3_098_332G1_scaffold_279_24
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27638..27865)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Lactobacillus oris RepID=E3C6C3_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EFQ53741.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
UPF0154 protein
L3_098_332G1_scaffold_279_25
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27940..28191)
DNA (252bp) protein (84aa)
UPF0291 protein HMPREF9265_0809 n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6C4_9LACO
UPF0291 protein HMPREF9265_0809 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
hypothetical protein
L3_098_332G1_scaffold_279_26
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28511..29134
DNA (624bp) protein (208aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
lexA; transcriptional repressor LexA (EC:3.4.21.88)
LexA repressor n=2 Tax=Lactobacillus oris RepID=E3C6C5_9LACO
L3_098_332G1_scaffold_279_27
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29418..30575)
DNA (1158bp) protein (386aa)
Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:EFQ53742.1}; EC=2.3.3.10 {ECO:0000313|EMBL:EFQ53742.1};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Hydroxymethylglutaryl-CoA synthase n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6C6_9LACO
hydroxymethylglutaryl-CoA synthase
L3_098_332G1_scaffold_279_28
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30579..31307)
DNA (729bp) protein (243aa)
Ribonuclease HI {ECO:0000313|EMBL:EFQ53732.1}; EC=3.1.26.4 {ECO:0000313|EMBL:EFQ53732.1};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Ribonuclease HI n=1 Tax=Lactobacillus oris PB013-T2-3 RepID=E3C6C7_9LACO
RNase HI
L3_098_332G1_scaffold_279_29
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31732..32328)
DNA (597bp) protein (199aa)
Uncharacterized protein n=2 Tax=Lactobacillus oris RepID=E3C6C8_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EFQ53704.1}; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
hypothetical protein
L3_098_332G1_scaffold_279_30
Lactobacillus oris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32402..32968)
DNA (567bp) protein (189aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=908339 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus oris PB013-T2-3.;"
Adenine phosphoribosyltransferase n=2 Tax=Lactobacillus oris RepID=E3C6C9_9LACO
adenine phosphoribosyltransferase
Displaying items 1-30 of 41 in total

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