ggKbase home page

L3_101_000G1_scaffold_2769

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_2769_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..999)
DNA (999bp) protein (333aa)
Collagen adhesion protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BLM8_CLOPF
Collagen adhesion protein {ECO:0000313|EMBL:EDS79290.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
cna; collagen adhesin
L3_101_000G1_scaffold_2769_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1144..1494)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=H7D0D1_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EIA15639.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
L3_101_000G1_scaffold_2769_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1618..2175)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M88_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB62497.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2141..2602)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M88_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB62497.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2648..3133)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M87_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB62498.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3446..4549
DNA (1104bp) protein (368aa)
Probable transcription regulator phage-related n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M86_CLOPE
transcription regulator phage-related
Probable transcription regulator phage-related {ECO:0000313|EMBL:BAB62499.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4663..4881)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M85_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB62500.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4891..4983)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93M85_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB62500.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5134..6030)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CX01_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:BAO58428.1}; TaxID=1502 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens.;"
hypothetical protein
L3_101_000G1_scaffold_2769_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6790..7542
DNA (753bp) protein (251aa)
Soj protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93ME6_CLOPE
soj; Soj protein
Sporulation initiation inhibitor protein soj {ECO:0000313|EMBL:EDS79347.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_101_000G1_scaffold_2769_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7601..8875
DNA (1275bp) protein (425aa)
ParB protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q93ME5_CLOPE
parB; ParB protein
ParB protein {ECO:0000313|EMBL:BAB62439.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_000G1_scaffold_2769_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8991..9353
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BLI1_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDS79407.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein
L3_101_000G1_scaffold_2769_13
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10922..11089)
DNA (168bp) protein (56aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D5J0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG53405.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L3_101_000G1_scaffold_2769_14
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

11366..12274
DNA (909bp) protein (303aa)
ABC transporter related protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFR5_9FIRM
multidrug ABC transporter ATPase
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
L3_101_000G1_scaffold_2769_15

Not on your lists

12282..13073
DNA (792bp) protein (264aa)
Marine sediment metagenome DNA, contig: S01H4_C02114 {ECO:0000313|EMBL:GAG56685.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC-2 type transporter (Fragment) id=3742902 bin=GWC2_Chloroflexi_49_37 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
ABC-2 type transporter
L3_101_000G1_scaffold_2769_16
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13110..13427
DNA (318bp) protein (106aa)
Nitrile hydratase alpha chain n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF60_9CLOT
Nitrile hydratase alpha chain {ECO:0000313|EMBL:EGD46998.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
hypothetical protein
L3_101_000G1_scaffold_2769_17
unknown

Not on your lists

13417..14055
DNA (639bp) protein (213aa)

This feature has no annotations

L3_101_000G1_scaffold_2769_18
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14071..15321
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:GAE87565.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
hypothetical protein
L3_101_000G1_scaffold_2769_19
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15318..16199
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF64_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGD47002.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
hypothetical protein
L3_101_000G1_scaffold_2769_20
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16201..16944
DNA (744bp) protein (248aa)
Nucleotidyl transferase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF65_9CLOT
Nucleotidyl transferase {ECO:0000313|EMBL:EGD47003.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
nucleotidyl transferase
L3_101_000G1_scaffold_2769_21
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16960..17874
DNA (915bp) protein (305aa)
Radical SAM domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF66_9CLOT
Radical SAM domain heme biosynthesis protein {ECO:0000313|EMBL:GAE87555.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
putative Fe-S oxidoreductase
L3_101_000G1_scaffold_2769_22
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17880..19049
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2J9M8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67257.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L3_101_000G1_scaffold_2769_23
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19046..20704
DNA (1659bp) protein (553aa)
Radical SAM domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TF69_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:GAE90814.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
Fe-S oxidoreductase
L3_101_000G1_scaffold_2769_24
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20706..21896
DNA (1191bp) protein (397aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
mtnK; methylthioribose kinase (EC:2.7.1.100)
Methylthioribose kinase n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1YAH5_ANEAE
L3_101_000G1_scaffold_2769_25
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21926..23134
DNA (1209bp) protein (403aa)
S-adenosylmethionine synthase {ECO:0000255|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000255|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000255|HAMAP-Rule:MF_00086};; MAT {ECO:0000255|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000255|HAMAP-Rule:MF_00086}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
S-adenosylmethionine synthetase n=1 Tax=Clostridium tunisiense RepID=UPI0002DE85AF
metK; S-adenosylmethionine synthetase
L3_101_000G1_scaffold_2769_26
unknown

Not on your lists

23327..23521
DNA (195bp) protein (65aa)

This feature has no annotations

L3_101_000G1_scaffold_2769_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23620..24042
DNA (423bp) protein (141aa)
Response regulator receiver domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QDT3_9CLOT
response regulator
Response regulator {ECO:0000313|EMBL:AIY83167.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_101_000G1_scaffold_2769_28
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24272..25510
DNA (1239bp) protein (413aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEU8_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EKY26112.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
L3_101_000G1_scaffold_2769_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26767..27237)
DNA (471bp) protein (157aa)
Uncharacterized protein PCP12 n=2 Tax=Clostridium perfringens RepID=Y3012_CLOPE
hypothetical protein
Nitrate ABC transporter ATP binding protein {ECO:0000313|EMBL:EDS80933.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_101_000G1_scaffold_2769_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27790..28641)
DNA (852bp) protein (284aa)
Uncharacterized protein n=3 Tax=Clostridium botulinum RepID=C4B693_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KEI04288.1}; Flags: Fragment;; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
putative epsilon-toxin type B
Displaying items 1-30 of 32 in total

View Taxonomy