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L3_101_000G1_scaffold_2809

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_2809_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(21..209)
DNA (189bp) protein (63aa)
transposase n=1 Tax=Staphylococcus epidermidis RepID=UPI000357CFA7
truncated transposase
IS1272, transposase {ECO:0000313|EMBL:EFE58944.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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751..1800
DNA (1050bp) protein (350aa)
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFE58945.1}; EC=1.11.1.1 {ECO:0000313|EMBL:EFE58945.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NADH peroxidase n=10 Tax=Staphylococcus epidermidis RepID=H3V361_STAEP
hypothetical protein
L3_101_000G1_scaffold_2809_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2105..2995
DNA (891bp) protein (297aa)
fda; fructose-bisphosphate aldolase class 1 (EC:4.1.2.13)
Fructose-bisphosphate aldolase class 1 {ECO:0000256|HAMAP-Rule:MF_00729}; EC=4.1.2.13 {ECO:0000256|HAMAP-Rule:MF_00729};; Fructose-bisphosphate aldolase class I {ECO:0000256|HAMAP-Rule:MF_00729}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Fructose-bisphosphate aldolase class 1 n=48 Tax=Staphylococcus epidermidis RepID=ALF1_STAES
L3_101_000G1_scaffold_2809_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3128..4051)
DNA (924bp) protein (308aa)
Uncharacterized protein n=42 Tax=Staphylococcus epidermidis RepID=Q8CR13_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE58947.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4446..5975)
DNA (1530bp) protein (510aa)
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Malate:quinone oxidoreductase (EC:1.1.5.4)
Probable malate:quinone oxidoreductase 4 n=60 Tax=Staphylococcus epidermidis RepID=MQO4_STAES
L3_101_000G1_scaffold_2809_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6154..6972)
DNA (819bp) protein (273aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Putative pyruvate, phosphate dikinase regulatory protein 2 n=51 Tax=Staphylococcus epidermidis RepID=PDRP2_STAEQ
kinase/pyrophosphorylase family protein
L3_101_000G1_scaffold_2809_7
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6974..9601)
DNA (2628bp) protein (876aa)
Pyruvate,phosphate dikinase (EC:2.7.9.1)
Phosphoenolpyruvate-protein phosphatase n=36 Tax=Staphylococcus epidermidis RepID=Q8CR11_STAES
Pyruvate phosphate dikinase {ECO:0000313|EMBL:ETJ14103.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_101_000G1_scaffold_2809_8
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9949..11544)
DNA (1596bp) protein (532aa)
Acetate-CoA ligase n=43 Tax=Staphylococcus epidermidis RepID=Q8CR10_STAES
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Putative Butyrate-CoA ligase {ECO:0000313|EMBL:ETJ14102.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L3_101_000G1_scaffold_2809_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11881..12327)
DNA (447bp) protein (149aa)
Uncharacterized protein n=45 Tax=Staphylococcus epidermidis RepID=Q8CR09_STAES
hypothetical protein
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EFE58952.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12355..12573)
DNA (219bp) protein (73aa)
Uncharacterized protein n=46 Tax=Staphylococcus epidermidis RepID=Q8CR08_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE58953.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13020..14036)
DNA (1017bp) protein (339aa)
Amidohydrolase n=2 Tax=Staphylococcus epidermidis RepID=H3VUV3_STAEP
amidohydrolase
Amidohydrolase family protein {ECO:0000313|EMBL:AAW52968.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_101_000G1_scaffold_2809_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14358..16076)
DNA (1719bp) protein (573aa)
betA; choline dehydrogenase (EC:1.1.99.1)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Oxygen-dependent choline dehydrogenase n=79 Tax=Staphylococcus epidermidis RepID=BETA_STAES
L3_101_000G1_scaffold_2809_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16236..17726)
DNA (1491bp) protein (497aa)
Betaine aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000256|SAAS:SAAS00007649}; EC=1.2.1.8 {ECO:0000256|SAAS:SAAS00007649};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Betaine aldehyde dehydrogenase n=42 Tax=Staphylococcus epidermidis RepID=Q5HL10_STAEQ
L3_101_000G1_scaffold_2809_14

Not on your lists

18195..18761
DNA (567bp) protein (189aa)
Uncharacterized protein n=13 Tax=Staphylococcus epidermidis RepID=Q8CR07_STAES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ21168.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18702..20183)
DNA (1482bp) protein (494aa)
Transporter, betaine/carnitine/choline family n=1 Tax=Staphylococcus epidermidis NIHLM039 RepID=J0ZR20_STAEP
High-affinity choline uptake protein BetT
Transporter, betaine/carnitine/choline family {ECO:0000313|EMBL:EFE58958.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20622..21920)
DNA (1299bp) protein (433aa)
Anaerobic dicarboxylate transport n=58 Tax=Staphylococcus epidermidis RepID=Q8CMX9_STAES
Anaerobic C4-dicarboxylate membrane transporter
Anaerobic C4-dicarboxylate membrane transporter {ECO:0000313|EMBL:AAW52983.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L3_101_000G1_scaffold_2809_17

Not on your lists

comp(22284..22820)
DNA (537bp) protein (179aa)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=48 Tax=Staphylococcus epidermidis RepID=Q5HL05_STAEQ
Uncharacterized protein {ECO:0000313|EMBL:ETJ21171.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_18

Not on your lists

comp(22817..24667)
DNA (1851bp) protein (617aa)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=11 Tax=Staphylococcus epidermidis RepID=H3V377_STAEP
Anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:ETJ21172.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_19

Not on your lists

comp(24986..25291)
DNA (306bp) protein (102aa)
Uncharacterized protein n=46 Tax=Staphylococcus epidermidis RepID=Q5HL03_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ21173.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25615..26214)
DNA (600bp) protein (200aa)
cysC; adenylylsulfate kinase (EC:2.7.1.25)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Adenylyl-sulfate kinase n=43 Tax=Staphylococcus epidermidis RepID=CYSC_STAEQ
L3_101_000G1_scaffold_2809_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26230..27408)
DNA (1179bp) protein (393aa)
sat; sulfate adenylyltransferase (EC:2.7.7.4)
Sulfate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00066}; EC=2.7.7.4 {ECO:0000255|HAMAP-Rule:MF_00066};; ATP-sulfurylase {ECO:0000255|HAMAP-Rule:MF_00066}; Sulfate adenylate transferase {ECO:0000255|HAMAP-Rule:MF_00066}; Short=SAT {ECO:0000255|HAMAP-Rule:MF_00066};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Sulfate adenylyltransferase n=29 Tax=Staphylococcus epidermidis RepID=SAT_STAES
L3_101_000G1_scaffold_2809_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27432..28331)
DNA (900bp) protein (300aa)
Uncharacterized protein n=38 Tax=Staphylococcus epidermidis RepID=C5QBL3_STAEP
membrane protein, putative
Uncharacterized protein {ECO:0000313|EMBL:EFE58965.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L3_101_000G1_scaffold_2809_23

Not on your lists

comp(28352..28963)
DNA (612bp) protein (204aa)
Siroheme synthase / Precorrin-2 oxidase (EC:1.3.1.76)
Precorrin-2 dehydrogenase n=21 Tax=Staphylococcus epidermidis RepID=C5QBL2_STAEP
Uncharacterized protein {ECO:0000313|EMBL:ETJ21178.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_24

Not on your lists

comp(29038..29817)
DNA (780bp) protein (260aa)
Uroporphyrinogen-III methyltransferase (EC:2.1.1.107)
Uroporphyrin-III C-methyltransferase n=37 Tax=Staphylococcus RepID=Q8CR01_STAES
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:ETJ21179.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_101_000G1_scaffold_2809_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29839..31557)
DNA (1719bp) protein (573aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000256|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000256|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000256|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO:0000256|HAMAP-Rule:MF_01540};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Sulfite reductase [NADPH] hemoprotein beta-component (EC:1.8.1.2)
Sulfite reductase [NADPH] hemoprotein beta-component n=37 Tax=Staphylococcus epidermidis RepID=C5QBL0_STAEP
L3_101_000G1_scaffold_2809_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31577..33046)
DNA (1470bp) protein (490aa)
Sulfite reductase [NADPH] flavoprotein alpha-component (EC:1.8.1.2)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|SAAS:SAAS00014038}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00276386};; EC=1.8.1.2 {ECO:0000256|SAAS:SAAS00013953};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Sulfite reductase (NADPH) flavoprotein, alpha-component n=1 Tax=Staphylococcus epidermidis BCM-HMP0060 RepID=C5QBK9_STAEP
Displaying 26 items

View Taxonomy