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L3_101_000G1_scaffold_319

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_319_1
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(2..358)
DNA (357bp) protein (119aa)
Toxin-antitoxin system antitoxin component Xre family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YIU4_9FIRM
Toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CDD31344.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Helix-turn-helix.
L3_101_000G1_scaffold_319_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(345..983)
DNA (639bp) protein (213aa)
Flagellar biosynthetic protein FliP n=3 Tax=Clostridium difficile RepID=T3WXL1_CLODI
fliP; Flagellar biosynthesis protein FliP
Component of the flagellar export machinery {ECO:0000313|EMBL:CDS83350.1}; Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:CDS83236.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_101_000G1_scaffold_319_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(984..1358)
DNA (375bp) protein (125aa)
Uncharacterized protein n=79 Tax=Clostridium difficile RepID=G6BT35_CLODI
Flagellar protein FliZ {ECO:0000313|EMBL:CCL22163.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
fliZ; Flagellar protein FliZ
L3_101_000G1_scaffold_319_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1373..1816)
DNA (444bp) protein (148aa)
Flagellar basal body-associated FliL family protein n=65 Tax=Clostridium difficile RepID=T3IIN1_CLODC
fliL; Flagellar basal body-associated protein FliL
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:CCL22162.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_101_000G1_scaffold_319_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1828..2523)
DNA (696bp) protein (232aa)
Membrane MotB of proton-channel complex MotA/MotB family protein n=104 Tax=Clostridium difficile RepID=T3IK93_CLODC
motB; Flagellar motor rotation protein MotB(Chemotaxis protein MotB)
Flagellar motor rotation protein MotB (Chemotaxis protein MotB) {ECO:0000313|EMBL:CCL22161.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_101_000G1_scaffold_319_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2513..3331)
DNA (819bp) protein (273aa)
MotA/TolQ/ExbB proton channel family protein n=132 Tax=Clostridium difficile RepID=T3INK9_CLODC
motA; Flagellar motor rotation protein MotA
Chemotaxis protein {ECO:0000313|EMBL:CKH76821.1}; Flagellar motor rotation protein MotA {ECO:0000313|EMBL:CEJ96769.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_101_000G1_scaffold_319_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3331..3534)
DNA (204bp) protein (68aa)
Flagellar family protein n=158 Tax=Clostridium difficile RepID=T3IMC6_CLODC
FlbD; Flagellar protein FlbD
Flagellar family protein {ECO:0000313|EMBL:EQG78748.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_101_000G1_scaffold_319_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3547..4530)
DNA (984bp) protein (328aa)
Flagellar hook-basal body protein n=113 Tax=Clostridium difficile RepID=G6BT40_CLODI
Flagellar hook protein FlgE (Distal rod protein) {ECO:0000313|EMBL:CCL22158.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
flgE; Flagellar hook protein FlgE (Distal rodprotein)
L3_101_000G1_scaffold_319_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4557..5165)
DNA (609bp) protein (203aa)
Flagellar hook capping family protein n=97 Tax=Clostridium difficile RepID=T2V6G0_CLODI
Basal-body rod modification protein FlgD {ECO:0000313|EMBL:CCL22157.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
flgD; Basal-body rod modification protein FlgD
L3_101_000G1_scaffold_319_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5183..6388)
DNA (1206bp) protein (402aa)
Flagellar hook-length control FliK family protein n=2 Tax=Clostridium difficile RepID=T4Q0G6_CLODI
fliK; Flagellar hook-length control protein FliK
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:CAJ67074.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_101_000G1_scaffold_319_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6417..6863)
DNA (447bp) protein (149aa)
Flagellar export protein FliJ n=100 Tax=Clostridium difficile RepID=T3INK4_CLODC
Flagellar export protein FliJ {ECO:0000313|EMBL:CDS83333.1}; Flagellar protein {ECO:0000313|EMBL:CKH76988.1}; Flagellar protein FliJ {ECO:0000313|EMBL:CDS83217.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliJ; Flagellar protein FliJ
L3_101_000G1_scaffold_319_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6894..8213)
DNA (1320bp) protein (440aa)
ATP synthase subunit beta FliI {ECO:0000313|EMBL:CDS83215.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CDS83215.1};; Flagellar-specific ATPase {ECO:0000313|EMBL:CDS83330.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CDS83330.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Flagellar protein export ATPase FliI n=96 Tax=Clostridium difficile RepID=G6BT44_CLODI
flagellum-specific ATP synthase
L3_101_000G1_scaffold_319_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8217..8957)
DNA (741bp) protein (247aa)
Flagellar assembly protein FliH n=9 Tax=Clostridium difficile RepID=U3Z4F3_CLODI
Flagellar assembly protein FliH {ECO:0000313|EMBL:CDS98967.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliH; flagellar assembly protein
L3_101_000G1_scaffold_319_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8941..10011)
DNA (1071bp) protein (357aa)
Flagellar motor switch protein FliG n=95 Tax=Clostridium difficile RepID=G6BT46_CLODI
Flagellar motor switch protein FliG {ECO:0000313|EMBL:CDS83210.1}; Flagellar motor switching and energizing component {ECO:0000313|EMBL:CDS83328.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliG; flagellar motor switch protein
L3_101_000G1_scaffold_319_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10024..11574)
DNA (1551bp) protein (517aa)
Flagellar M-ring protein n=101 Tax=Clostridium difficile RepID=T3IK85_CLODC
fliF; Flagellar M-ring protein FliF
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_101_000G1_scaffold_319_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11599..11916)
DNA (318bp) protein (106aa)
Flagellar hook-basal body complex protein FliE n=111 Tax=Clostridium difficile RepID=G6BT48_CLODI
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliE; flagellar hook-basal body protein FliE
L3_101_000G1_scaffold_319_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11926..12330)
DNA (405bp) protein (135aa)
Flagellar basal-body rod protein FlgC n=168 Tax=Clostridium difficile RepID=T3IMB7_CLODC
flagellar basal body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_101_000G1_scaffold_319_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12338..12655)
DNA (318bp) protein (106aa)
Flagellar basal-body rod protein FlgB n=106 Tax=Clostridium difficile RepID=T2VH29_CLODI
flgB; flagellar basal-body rod protein
Flagellar basal-body rod protein {ECO:0000313|EMBL:CBE01890.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_101_000G1_scaffold_319_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13462..14553)
DNA (1092bp) protein (364aa)
QdtB n=5 Tax=Clostridium difficile RepID=T3I822_CLODI
Erythromycin biosynthesis sensory transduction protein eryC1 {ECO:0000313|EMBL:CDS98882.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_101_000G1_scaffold_319_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14640..15068)
DNA (429bp) protein (143aa)
WxcM-like protein n=53 Tax=Clostridium difficile RepID=G6BT52_CLODI
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CDS98869.1}; WxcM-like protein {ECO:0000313|EMBL:CDS83322.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_101_000G1_scaffold_319_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15141..16085)
DNA (945bp) protein (315aa)
Ornithine cyclodeaminase/mu-crystallin family protein n=1 Tax=Clostridium difficile P30 RepID=T4ZLT7_CLODI
Ornithine cyclodeaminase/mu-crystallin family protein {ECO:0000313|EMBL:CDS83321.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ornithine cyclodeaminase
L3_101_000G1_scaffold_319_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16105..17337)
DNA (1233bp) protein (411aa)
Carbamoyl-phosphate synthase L chain, ATP binding domain protein n=2 Tax=Clostridium difficile RepID=T4Q0R8_CLODI
Putative carbamoyl-phosphate-synthetase {ECO:0000313|EMBL:CDS98817.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
carbamoyl-phosphate-synthetase
L3_101_000G1_scaffold_319_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17429..18424)
DNA (996bp) protein (332aa)
FemAB family protein n=2 Tax=Clostridium difficile RepID=T4Q1P5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22043.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_101_000G1_scaffold_319_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18433..20547)
DNA (2115bp) protein (705aa)
Glycosyltransferase like family protein n=38 Tax=Clostridium difficile RepID=T2V6C8_CLODI
Glycosyl transferase, group 2 family {ECO:0000313|EMBL:CDS83189.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS83318.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
glycosyl transferase group 2 family protein
L3_101_000G1_scaffold_319_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20540..22417)
DNA (1878bp) protein (626aa)
Methyltransferase domain protein n=2 Tax=Clostridium difficile RepID=T4Q0F1_CLODI
Glycosyl transferase family 2 {ECO:0000313|EMBL:CDS83187.1}; Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:CDS83317.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
glycosyl transferase group 2 family protein
L3_101_000G1_scaffold_319_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22441..24582)
DNA (2142bp) protein (714aa)
Glycosyltransferase {ECO:0000313|EMBL:CDS98771.1}; EC=2.4.1.- {ECO:0000313|EMBL:CDS98771.1};; Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:CDS83316.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Glycosyl transferase 2 family protein n=22 Tax=Clostridium difficile RepID=T2XYA9_CLODI
glycosyltransferase
L3_101_000G1_scaffold_319_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24675..25634)
DNA (960bp) protein (320aa)
Flagellin C n=32 Tax=Clostridium difficile RepID=U4AUT0_CLODI
Flagellin C {ECO:0000313|EMBL:CDS83183.1}; Flagellin protein {ECO:0000313|EMBL:CDS83315.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliC; flagellin subunit
L3_101_000G1_scaffold_319_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25649..25984)
DNA (336bp) protein (112aa)
Flagellar FliT family protein n=29 Tax=Clostridium difficile RepID=T2W5Y7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS83314.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_101_000G1_scaffold_319_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25987..27510)
DNA (1524bp) protein (508aa)
Flagellar hook-associated family protein n=28 Tax=Clostridium difficile RepID=T2W556_CLODI
Flagellar cap protein FliD {ECO:0000313|EMBL:CDS83313.1}; Flagellar hook-associated protein 2 FliD (Or HAP2) {ECO:0000313|EMBL:CDS98738.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
flagellar cap protein
L3_101_000G1_scaffold_319_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27531..27887)
DNA (357bp) protein (119aa)
Flagellar protein FliS n=84 Tax=Clostridium difficile RepID=T2V6Y1_CLODI
Flagellar protein FliS2 {ECO:0000313|EMBL:CDS83177.1}; Putative flagellar protein FliS {ECO:0000313|EMBL:CDS83312.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fliS2; flagellar protein
Displaying items 1-30 of 67 in total

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