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L3_101_000G1_scaffold_321

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_321_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(114..497)
DNA (384bp) protein (128aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LYW0_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EQJ52109.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_101_000G1_scaffold_321_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1198..2556
DNA (1359bp) protein (453aa)
Chromosomal replication initiator protein DnaA n=5 Tax=Firmicutes RepID=E4LYW3_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
dnaA; chromosomal replication initiation protein
L3_101_000G1_scaffold_321_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2707..3825
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DNA polymerase III subunit beta n=5 Tax=Firmicutes RepID=E4LYW4_9CLOT
dnaN; DNA polymerase III subunit beta
L3_101_000G1_scaffold_321_4
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4033..4236
DNA (204bp) protein (68aa)
S4 domain protein YaaA n=5 Tax=Firmicutes RepID=E4LYW6_9CLOT
S4 domain-containing protein YaaA {ECO:0000313|EMBL:EGX75508.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
S4-like RNA-binding protein
L3_101_000G1_scaffold_321_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4233..5333
DNA (1101bp) protein (367aa)
DNA replication and repair protein RecF n=5 Tax=Firmicutes RepID=E4LYW7_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
recF; DNA replication and repair protein RecF
L3_101_000G1_scaffold_321_6
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5345..7288
DNA (1944bp) protein (648aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
DNA gyrase subunit B n=6 Tax=Firmicutes RepID=E4LYW8_9CLOT
gyrB; DNA gyrase subunit B
L3_101_000G1_scaffold_321_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7305..9818
DNA (2514bp) protein (838aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DNA gyrase subunit A n=1 Tax=Clostridium difficile P28 RepID=T4NA57_CLODI
gyrA; DNA gyrase subunit A
L3_101_000G1_scaffold_321_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10076..11362
DNA (1287bp) protein (429aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EFR35955.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EFR35955.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Clostridium sp. HGF2 RepID=E4LYX0_9CLOT
L3_101_000G1_scaffold_321_9
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12244..12699
DNA (456bp) protein (152aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=5 Tax=Firmicutes RepID=E4LYX1_9CLOT
cytidine/deoxycytidylate deaminase
L3_101_000G1_scaffold_321_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12794..14599
DNA (1806bp) protein (602aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EQJ55287.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EQJ55287.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunit gamma and tau n=1 Tax=Clostridium difficile P28 RepID=T4NJ63_CLODI
L3_101_000G1_scaffold_321_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14604..14912
DNA (309bp) protein (103aa)
Nucleoid-associated protein HMPREF9406_3109 n=7 Tax=Firmicutes RepID=E4LYX3_9CLOT
Nucleoid-associated protein QSI_2576 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_101_000G1_scaffold_321_12
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14912..15508
DNA (597bp) protein (199aa)
Recombination protein RecR n=4 Tax=Firmicutes RepID=E4LYX4_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
recombinase RecR
L3_101_000G1_scaffold_321_13
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15813..16748
DNA (936bp) protein (312aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LYX5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC83896.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L3_101_000G1_scaffold_321_14
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16979..17536)
DNA (558bp) protein (186aa)
Adenylate cyclase n=4 Tax=Firmicutes RepID=E4LYX6_9CLOT
Adenylate cyclase {ECO:0000313|EMBL:EFR35956.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_101_000G1_scaffold_321_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17596..18369
DNA (774bp) protein (258aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=5 Tax=Firmicutes RepID=E4LYX7_9CLOT
L3_101_000G1_scaffold_321_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18637..19857)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1AY92_9FIRM
Cell cycle family protein {ECO:0000313|EMBL:EQJ59893.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
FtsW/RodA/SpoVE family cell division protein
L3_101_000G1_scaffold_321_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20082..22613
DNA (2532bp) protein (844aa)
DNA mismatch repair protein MutS n=2 Tax=Firmicutes RepID=E4LYX9_9CLOT
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
DNA mismatch repair protein MutS
L3_101_000G1_scaffold_321_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22674..24761
DNA (2088bp) protein (696aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium difficile P28 RepID=T4NWI2_CLODI
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
mutL; DNA mismatch repair protein MutL
L3_101_000G1_scaffold_321_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24894..25805
DNA (912bp) protein (304aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=4 Tax=Firmicutes RepID=E4LYY1_9CLOT
L3_101_000G1_scaffold_321_20
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25807..26547
DNA (741bp) protein (247aa)
ThiF family protein n=3 Tax=Firmicutes RepID=E4LYY2_9CLOT
ThiF family protein {ECO:0000313|EMBL:EFR35973.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
UBA/THIF-type NAD/FAD binding protein
L3_101_000G1_scaffold_321_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26537..27316
DNA (780bp) protein (260aa)
Nitroreductase family protein n=3 Tax=Firmicutes RepID=E4LYY3_9CLOT
Nitroreductase family protein {ECO:0000313|EMBL:EQJ59899.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
nitroreductase
L3_101_000G1_scaffold_321_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27355..27549
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1B4B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ59900.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_101_000G1_scaffold_321_23
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27495..28199
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1B4B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFR35908.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_101_000G1_scaffold_321_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28519..28857
DNA (339bp) protein (113aa)
Transcriptional regulator, PadR family n=4 Tax=Firmicutes RepID=E4LYY5_9CLOT
Transcriptional regulator PadR-like family protein {ECO:0000313|EMBL:EQJ59901.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Transcriptional regulator, PadR family
L3_101_000G1_scaffold_321_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28835..29395
DNA (561bp) protein (187aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LYY6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR35897.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_101_000G1_scaffold_321_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29577..30227)
DNA (651bp) protein (217aa)
Pyridoxal phosphate enzyme, YggS family n=7 Tax=Firmicutes RepID=E4LYY7_9CLOT
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:ENY88555.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_101_000G1_scaffold_321_27
unknown

Not on your lists

30795..30917
DNA (123bp) protein (41aa)

This feature has no annotations

L3_101_000G1_scaffold_321_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30964..31596
DNA (633bp) protein (211aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Thymidylate kinase n=5 Tax=Firmicutes RepID=E4LYY9_9CLOT
thymidylate kinase
L3_101_000G1_scaffold_321_29
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

31589..32566
DNA (978bp) protein (326aa)
DNA polymerase III, delta' subunit n=5 Tax=Firmicutes RepID=E4LYZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC83871.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
holB; DNA polymerase III delta'' subunit
L3_101_000G1_scaffold_321_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32563..33633
DNA (1071bp) protein (357aa)
PSP1 C-terminal domain protein n=4 Tax=Firmicutes RepID=E4LYZ1_9CLOT
Polymerase suppressor protein 1/PSP1 family protein {ECO:0000313|EMBL:EQJ59907.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative PSP1-like protein
Displaying items 1-30 of 59 in total

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