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L3_101_000G1_scaffold_362

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_362_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..258
DNA (258bp) protein (86aa)
S-layer domain protein n=1 Tax=Clostridium difficile DA00244 RepID=T3W6K2_CLODI
Cell wall protein V {ECO:0000313|EMBL:CAQ64481.1}; Flags: Fragment;; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
S-layer protein
L3_101_000G1_scaffold_362_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1353..2063
DNA (711bp) protein (237aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4PWQ2_CLODI
Response regulator {ECO:0000313|EMBL:EQG77543.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
two-component signal transduction response regulator, LytTR family
L3_101_000G1_scaffold_362_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2057..3376
DNA (1320bp) protein (440aa)
two-component signal transduction sensor histidine kinase (EC:2.7.13.3)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=2 Tax=Clostridium difficile RepID=T4PVX1_CLODI
Sensor histidine kinase VirS {ECO:0000313|EMBL:CCL32048.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_101_000G1_scaffold_362_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3915..6464
DNA (2550bp) protein (850aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PPS3_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQG77802.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter permease
L3_101_000G1_scaffold_362_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6698..7372
DNA (675bp) protein (225aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T4PVP2_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG77578.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_101_000G1_scaffold_362_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7356..9098
DNA (1743bp) protein (581aa)
ABC transporter, ATP-binding protein n=76 Tax=Clostridium difficile RepID=G6BX61_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG77555.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter
L3_101_000G1_scaffold_362_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9513..10757)
DNA (1245bp) protein (415aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=34 Tax=Clostridium difficile RepID=G6BX62_CLODI
D-alanyl-D-alanine carboxypeptidase
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CBE02232.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_101_000G1_scaffold_362_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10800..13634)
DNA (2835bp) protein (945aa)
Sigma-54 interaction domain protein n=15 Tax=Clostridium difficile RepID=T2V1G7_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EQG77805.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Transcription antiterminator
L3_101_000G1_scaffold_362_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14320..15117
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P42 RepID=T4PPS8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE02236.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_101_000G1_scaffold_362_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15118..15612
DNA (495bp) protein (165aa)
Uncharacterized protein n=140 Tax=Clostridium difficile RepID=G6B2F2_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE69623.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_101_000G1_scaffold_362_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15838..17016
DNA (1179bp) protein (393aa)
Nucleoside recognition family protein n=125 Tax=Clostridium difficile RepID=T3ICM3_CLODC
conserved hypothetical protein
Nucleoside recognition family protein {ECO:0000313|EMBL:EQE69549.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_101_000G1_scaffold_362_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17270..18877
DNA (1608bp) protein (536aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
His Kinase A domain protein n=193 Tax=Clostridium difficile RepID=C9XKG2_CLODC
two-component sensor histidine kinase
L3_101_000G1_scaffold_362_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18868..19572
DNA (705bp) protein (235aa)
Response regulator n=202 Tax=Clostridium difficile RepID=C9XKG3_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CDT25038.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_101_000G1_scaffold_362_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19606..19719
DNA (114bp) protein (38aa)
Uncharacterized protein n=18 Tax=Clostridium difficile RepID=T2VW46_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE69566.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_101_000G1_scaffold_362_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19864..20052)
DNA (189bp) protein (63aa)
Putative membrane protein n=97 Tax=Clostridium difficile RepID=T2WEG3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28337.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
conserved hypothetical protein
L3_101_000G1_scaffold_362_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20257..20439)
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS83749.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_101_000G1_scaffold_362_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20720..23818
DNA (3099bp) protein (1033aa)
Diguanylate cyclase domain protein n=2 Tax=Clostridium difficile RepID=T4PVQ3_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG77749.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative signaling protein
L3_101_000G1_scaffold_362_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23941..25227
DNA (1287bp) protein (429aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=T3IIF9_CLODC
putative transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EQG77556.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_101_000G1_scaffold_362_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25606..26712)
DNA (1107bp) protein (369aa)
Peptidase T-like protein {ECO:0000313|EMBL:CDS83753.1}; Putative peptidase, M20 family {ECO:0000313|EMBL:CDT24996.1}; EC=3.4.11.- {ECO:0000313|EMBL:CDT24996.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
M42 glutamyl aminopeptidase family protein n=21 Tax=Clostridium difficile RepID=T2X2L0_CLODI
peptidase
L3_101_000G1_scaffold_362_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26747..28288)
DNA (1542bp) protein (514aa)
C4-dicarboxylate anaerobic carrier family protein n=145 Tax=Clostridium difficile RepID=T2TPM3_CLODI
aminobenzoyl-glutamate transporter
Putative aminobenzoyl-glutamate transporter {ECO:0000313|EMBL:CBE02250.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_101_000G1_scaffold_362_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28650..29396)
DNA (747bp) protein (249aa)
Metallo-beta-lactamase superfamily protein n=34 Tax=Clostridium difficile RepID=T3C8V6_CLODI
Metallo-beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:CDS83757.1}; Putative beta-lactamase-like hydrolase {ECO:0000313|EMBL:CDT24976.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
metallo-beta-lactamase
L3_101_000G1_scaffold_362_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29608..30918)
DNA (1311bp) protein (437aa)
Amidohydrolase family protein n=2 Tax=Clostridium difficile RepID=T4PVQ8_CLODI
amidohydrolase
Amidohydrolase family protein {ECO:0000313|EMBL:EQE69600.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_101_000G1_scaffold_362_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30931..31401)
DNA (471bp) protein (157aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=D5Q0B8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL00456.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_101_000G1_scaffold_362_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31405..32256)
DNA (852bp) protein (284aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6BX77_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL32275.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_101_000G1_scaffold_362_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33208..34119
DNA (912bp) protein (304aa)
DeoR-like helix-turn-helix domain protein n=2 Tax=Clostridium difficile RepID=T4PVZ1_CLODI
HTH domain protein {ECO:0000313|EMBL:EHJ34805.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DeoR family transcriptional regulator
L3_101_000G1_scaffold_362_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34294..34791
DNA (498bp) protein (166aa)
GyrI-like small molecule binding domain protein n=13 Tax=Clostridium difficile RepID=T2XUM4_CLODI
GyrI-like small molecule binding domain protein {ECO:0000313|EMBL:EQE69554.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative transcriptional regulator
L3_101_000G1_scaffold_362_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35535..35897
DNA (363bp) protein (121aa)
Chemotaxis protein CheY n=138 Tax=Clostridium difficile RepID=T3IBT8_CLODC
cheY; chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:EQG78035.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_101_000G1_scaffold_362_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36058..36579
DNA (522bp) protein (174aa)
Chemotaxis protein CheY-P phosphatase CheC {ECO:0000313|EMBL:CCL32325.1}; EC=3.-.-.- {ECO:0000313|EMBL:CCL32325.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Chemotaxis protein CheC n=151 Tax=Clostridium difficile RepID=C9XKH5_CLODC
cheC; chemotaxis protein CheC
L3_101_000G1_scaffold_362_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36576..37061
DNA (486bp) protein (162aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Clostridium difficile CD69 RepID=T3AFB3_CLODI
chemotaxis protein
L3_101_000G1_scaffold_362_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37104..37622
DNA (519bp) protein (173aa)
CheW-like domain protein n=65 Tax=Clostridium difficile RepID=T2VG63_CLODI
Chemotaxis protein {ECO:0000313|EMBL:CDS83777.1}; Purine-binding chemotaxis protein CheW {ECO:0000313|EMBL:CDS83682.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cheW; chemotaxis protein
Displaying items 1-30 of 51 in total

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