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L3_101_000G1_scaffold_403

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_403_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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321..1316
DNA (996bp) protein (332aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDY4_9FIRM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EES76883.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_101_000G1_scaffold_403_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1402..1665)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=2 Tax=Ruminococcus RepID=C6JDY3_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
rpsT; 30S ribosomal protein S20
L3_101_000G1_scaffold_403_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2019..2933
DNA (915bp) protein (305aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Germination protease. (EC:3.4.24.78)
Germination protease n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDY2_9FIRM
L3_101_000G1_scaffold_403_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2990..4285
DNA (1296bp) protein (432aa)
Stage II sporulation protein P n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDY1_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:EES76880.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Stage II sporulation protein P (SpoIIP).
L3_101_000G1_scaffold_403_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4794..6602
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
GTP-binding protein LepA n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003010C45
GTP-binding protein LepA
L3_101_000G1_scaffold_403_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6628..6993
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76878.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_101_000G1_scaffold_403_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7116..8258
DNA (1143bp) protein (381aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76877.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_101_000G1_scaffold_403_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8493..11336
DNA (2844bp) protein (948aa)
excinuclease ABC subunit A n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00036FFD70
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
excinuclease ABC, A subunit
L3_101_000G1_scaffold_403_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11488..12477
DNA (990bp) protein (330aa)
MreB/Mrl family cell shape determining protein n=2 Tax=Ruminococcus RepID=C6JDX5_9FIRM
Cell shape determining protein MreB {ECO:0000313|EMBL:CDD79673.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
rod shape-determining protein MreB
L3_101_000G1_scaffold_403_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12610..14877
DNA (2268bp) protein (756aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CP04_9FIRM
L3_101_000G1_scaffold_403_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14956..15651
DNA (696bp) protein (232aa)
ComF family protein n=2 Tax=Ruminococcus RepID=C6JDX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79678.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amidophosphoribosyltransferase
L3_101_000G1_scaffold_403_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15857..16291
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79679.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_101_000G1_scaffold_403_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16288..17385
DNA (1098bp) protein (366aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79681.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_101_000G1_scaffold_403_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17496..18386
DNA (891bp) protein (297aa)
TIGR00159 family protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDW8_9FIRM
TIGR00159 family protein {ECO:0000313|EMBL:EES76867.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
conserved hypothetical protein TIGR00159
L3_101_000G1_scaffold_403_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18361..19674
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76866.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_101_000G1_scaffold_403_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19720..19983
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79687.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Phosphotransferase System HPr (HPr) Family
L3_101_000G1_scaffold_403_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20072..22660
DNA (2589bp) protein (863aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76864.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
FOG: Glucan-binding domain (YG repeat)
L3_101_000G1_scaffold_403_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22867..23205)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76862.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
EamA-like transporter family.
L3_101_000G1_scaffold_403_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23198..23548)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76861.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
EamA-like transporter family.
L3_101_000G1_scaffold_403_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23831..24766
DNA (936bp) protein (312aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.7.8.- 2.4.1.83)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76860.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_101_000G1_scaffold_403_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24766..25731
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80151.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_101_000G1_scaffold_403_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25728..27023
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76858.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Carbamoylphosphate synthase large subunit (split gene in MJ)
L3_101_000G1_scaffold_403_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27020..28150
DNA (1131bp) protein (377aa)
TDP-4-keto-6-deoxy-D-glucose transaminase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV8_9FIRM
TDP-4-keto-6-deoxy-D-glucose transaminase {ECO:0000313|EMBL:EES76857.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
TDP-4-keto-6-deoxy-D-glucose transaminase
L3_101_000G1_scaffold_403_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28175..29539
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80145.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
D-alanyl-D-alanine carboxypeptidase
L3_101_000G1_scaffold_403_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29560..30114
DNA (555bp) protein (185aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=2 Tax=Ruminococcus RepID=C6JDV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80143.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_101_000G1_scaffold_403_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30127..30942
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV5_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
L3_101_000G1_scaffold_403_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31063..32337
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80139.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_101_000G1_scaffold_403_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32436..34628
DNA (2193bp) protein (731aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76852.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Dimethyladenosine transferase (rRNA methylation)
L3_101_000G1_scaffold_403_29
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34631..37135
DNA (2505bp) protein (835aa)
Glycosyl transferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ84_9FIRM
Glycosyl transferase {ECO:0000313|EMBL:CDD80135.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted glycosyltransferases
L3_101_000G1_scaffold_403_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37137..39581
DNA (2445bp) protein (815aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76850.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
Displaying items 1-30 of 43 in total

View Taxonomy