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L3_101_000G1_scaffold_2638

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_2638_1
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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187..327
DNA (141bp) protein (47aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A8P9_DESDJ
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AFM00334.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
L3_101_000G1_scaffold_2638_2
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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405..1088
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S0C2_BUTPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL35609.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_101_000G1_scaffold_2638_3
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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1075..1392
DNA (318bp) protein (106aa)
Transcriptional regulator ArsR family n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S0C3_BUTPB
ArsR family transcriptional regulator
Transcriptional regulator ArsR family {ECO:0000313|EMBL:ADL35610.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_101_000G1_scaffold_2638_4
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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1373..2656
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B3W8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG91951.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
ABC transporter permease
L3_101_000G1_scaffold_2638_5
Lachnoanaerobaculum sp. OBRC5-5, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2678..3436
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XGY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJZ70542.1}; TaxID=936595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. OBRC5-5.;"
ABC transporter ATPase
L3_101_000G1_scaffold_2638_6
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3616..4020
DNA (405bp) protein (135aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P868_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDS12114.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
winged helix family two component response transcriptional regulator
L3_101_000G1_scaffold_2638_7
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4215..4580
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WUW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70829.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Predicted transcription factor, homolog of eukaryotic MBF1
L3_101_000G1_scaffold_2638_8
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4577..5494
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WUW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70830.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
ABC transporter
L3_101_000G1_scaffold_2638_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5499..6269
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WUW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70831.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L3_101_000G1_scaffold_2638_10
unknown

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6293..6472
DNA (180bp) protein (60aa)

This feature has no annotations

L3_101_000G1_scaffold_2638_11
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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6650..6994
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JW03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38389.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
response regulator receiver domain protein
L3_101_000G1_scaffold_2638_12
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7184..7540
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Blautia sp. KLE 1732 RepID=U2DJ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI96850.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
hypothetical protein
L3_101_000G1_scaffold_2638_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7561..8286
DNA (726bp) protein (242aa)
Transcriptional regulatory family protein n=2 Tax=Clostridium difficile RepID=T2TGI6_CLODI
Two-component responseregulator,Tn1549-like,CTn4-Orf26
Two-component response regulator,Tn1549-like,CTn4-Orf26 {ECO:0000313|EMBL:CAJ67943.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_101_000G1_scaffold_2638_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8291..9205
DNA (915bp) protein (305aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
His Kinase A domain protein n=1 Tax=Clostridium difficile F200 RepID=T4X760_CLODI
two-component sensor histidine kinase
L3_101_000G1_scaffold_2638_15
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9358..10281
DNA (924bp) protein (308aa)
ABC transporter family protein n=3 Tax=Clostridium difficile RepID=T2TDA4_CLODI
lantibiotic ABC transporter ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EPD59306.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_101_000G1_scaffold_2638_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10274..11059
DNA (786bp) protein (262aa)
ABC-2 transporter family protein n=2 Tax=Clostridium difficile RepID=T2YJH1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EEG95580.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
lantibiotic ABC transporter permease
L3_101_000G1_scaffold_2638_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11062..11841
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E10 RepID=U3V9L4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK98980.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
lantibiotic ABC transporter permease
L3_101_000G1_scaffold_2638_18
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11844..12311
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T2YJ35_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHE99965.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L3_101_000G1_scaffold_2638_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12304..12777
DNA (474bp) protein (158aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P868_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EDS12114.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_101_000G1_scaffold_2638_20
unknown

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12803..13048
DNA (246bp) protein (82aa)

This feature has no annotations

L3_101_000G1_scaffold_2638_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12996..13655
DNA (660bp) protein (220aa)
Resolvase, N-terminal domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1J0_RUMGN
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDN78112.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_101_000G1_scaffold_2638_22
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13701..13922
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LMC6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL20987.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_101_000G1_scaffold_2638_23
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13932..14243
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LMC7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL20988.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_101_000G1_scaffold_2638_24
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14246..14704
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LMC8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL20989.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_101_000G1_scaffold_2638_25
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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14796..15059
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RDH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43364.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
prevent-host-death family protein
L3_101_000G1_scaffold_2638_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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15052..15180
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R384_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43368.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Displaying 26 items

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