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L3_101_000G1_scaffold_596

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000G1_scaffold_596_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1454)
DNA (1452bp) protein (484aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKL2_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EGN31274.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_101_000G1_scaffold_596_2
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1606..2550)
DNA (945bp) protein (315aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6FB00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99247.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
uncharacterized domain HDIG
L3_101_000G1_scaffold_596_3
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2614..3969)
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31276.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_101_000G1_scaffold_596_4
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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4078..6453
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Endonuclease MutS2 n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKL4_9FIRM
MutS2 family protein
L3_101_000G1_scaffold_596_5
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6531..7244
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31278.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_101_000G1_scaffold_596_6
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7299..8705
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6E8S3_9FIRM
Signal transduction histidine kinase
L3_101_000G1_scaffold_596_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8867..10228)
DNA (1362bp) protein (454aa)
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q6C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31280.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_101_000G1_scaffold_596_8
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10450..10620
DNA (171bp) protein (57aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EKP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31281.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_101_000G1_scaffold_596_9
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10858..11511
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31282.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Predicted transcriptional regulators
L3_101_000G1_scaffold_596_10
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11607..12953)
DNA (1347bp) protein (449aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EIX8_9FIRM
Replicative DNA helicase {ECO:0000313|EMBL:CDA97269.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_101_000G1_scaffold_596_11
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12967..13413)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=2 Tax=Lachnospiraceae RepID=F7JKU7_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
LSU ribosomal protein L9P
L3_101_000G1_scaffold_596_12
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13475..15520)
DNA (2046bp) protein (682aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31286.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_101_000G1_scaffold_596_13
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15700..16509
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31287.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
HAD-superfamily hydrolase, subfamily IIB
L3_101_000G1_scaffold_596_14
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16643..17428)
DNA (786bp) protein (262aa)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
udp3; uridine phosphorylase Udp (EC:2.4.2.3)
Uridine phosphorylase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM2_9FIRM
L3_101_000G1_scaffold_596_15
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17475..17903)
DNA (429bp) protein (143aa)
Cytidine deaminase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM3_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:EGN31289.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
cytidine deaminase
L3_101_000G1_scaffold_596_16
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17952..18206
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31290.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Predicted nucleotidyltransferases
L3_101_000G1_scaffold_596_17
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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18190..18495
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31291.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
nucleotidyltransferase substrate binding protein, HI0074 family
L3_101_000G1_scaffold_596_18
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18642..18908)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKU8_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
SSU ribosomal protein S18P
L3_101_000G1_scaffold_596_19
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18952..19413)
DNA (462bp) protein (154aa)
Single-stranded DNA-binding protein n=2 Tax=Lachnospiraceae RepID=F7JKM6_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
single-strand binding protein
L3_101_000G1_scaffold_596_20
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19429..19716)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=2 Tax=Lachnospiraceae RepID=F7JKU9_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
SSU ribosomal protein S6P
L3_101_000G1_scaffold_596_21
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19847..20035)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6ENX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31295.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_101_000G1_scaffold_596_22
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20083..20904)
DNA (822bp) protein (274aa)
SrtB family sortase n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EWX1_9FIRM
SrtB family sortase {ECO:0000313|EMBL:CDB01604.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
sortase, SrtB family
L3_101_000G1_scaffold_596_23
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20906..21541)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6ELY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01603.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Uncharacterised ACR, YkgG family COG1556.
L3_101_000G1_scaffold_596_24
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21607..23130)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EXV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01601.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
ATPase family associated with various cellular activities (AAA).
L3_101_000G1_scaffold_596_25
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23199..24566)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6ENX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01600.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Predicted metallopeptidase (DUF2201).
L3_101_000G1_scaffold_596_26
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24575..25624)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EWW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01599.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
hypothetical protein
L3_101_000G1_scaffold_596_27
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25763..26875)
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31301.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_101_000G1_scaffold_596_28
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26890..27822)
DNA (933bp) protein (311aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31302.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_101_000G1_scaffold_596_29
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28047..28961
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31303.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_101_000G1_scaffold_596_30
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28918..29835)
DNA (918bp) protein (306aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6ELX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01593.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
LysR family transcriptional regulator
Displaying items 1-30 of 45 in total

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