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L3_101_000M1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_56_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..87
DNA (87bp) protein (29aa)
Recombinase./Resolvase, N terminal domain n=2 Tax=Clostridiales RepID=D4K9A5_9FIRM
conjugative transposon site-specific recombinase
Recombinase./Resolvase, N terminal domain {ECO:0000313|EMBL:CBL01418.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_101_000M1_scaffold_56_2
unknown

Not on your lists

140..538
DNA (399bp) protein (133aa)

This feature has no annotations

L3_101_000M1_scaffold_56_3
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(599..1954)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XZG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA20538.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Putative peptidoglycan-binding domain-containing protein
L3_101_000M1_scaffold_56_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1959..2426)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31529.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_101_000M1_scaffold_56_5
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2560..3270)
DNA (711bp) protein (237aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT90_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EDO61386.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_101_000M1_scaffold_56_6
unknown

Not on your lists

comp(3280..3387)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_101_000M1_scaffold_56_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3377..3814)
DNA (438bp) protein (146aa)
Toxin secretion/phage lysis holin n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L520_9FIRM
toxin secretion/phage lysis holin
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:CBL14715.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_101_000M1_scaffold_56_8
unknown

Not on your lists

comp(3965..4411)
DNA (447bp) protein (149aa)

This feature has no annotations

L3_101_000M1_scaffold_56_9
unknown

Not on your lists

comp(4408..4638)
DNA (231bp) protein (77aa)

This feature has no annotations

L3_101_000M1_scaffold_56_10
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4839..7910)
DNA (3072bp) protein (1024aa)
Cell divisionFtsK/SpoIIIE n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5WKH7_9FIRM
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:CCZ92967.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
hypothetical protein
L3_101_000M1_scaffold_56_11
unknown

Not on your lists

comp(7934..8443)
DNA (510bp) protein (170aa)

This feature has no annotations

L3_101_000M1_scaffold_56_12
unknown

Not on your lists

comp(8454..9578)
DNA (1125bp) protein (375aa)

This feature has no annotations

L3_101_000M1_scaffold_56_13
unknown

Not on your lists

comp(9703..10722)
DNA (1020bp) protein (340aa)

This feature has no annotations

L3_101_000M1_scaffold_56_14
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(10967..11914)
DNA (948bp) protein (316aa)
PhoB family transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE
two-component response regulator
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
L3_101_000M1_scaffold_56_15
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

12080..12937
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DTV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91020.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
L3_101_000M1_scaffold_56_16
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12956..13537)
DNA (582bp) protein (194aa)
Sortase and related acyltransferases (EC:2.3.1.-)
Sortase and related acyltransferases {ECO:0000313|EMBL:CBL41830.1}; EC=2.3.1.- {ECO:0000313|EMBL:CBL41830.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Sortase and related acyltransferases n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GVI8_9FIRM
L3_101_000M1_scaffold_56_17
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13863..15674
DNA (1812bp) protein (604aa)
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458, ECO:0000313|EMBL:CBK79441.1};; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Coprococcus catus GD/7 RepID=D4J520_9FIRM
L3_101_000M1_scaffold_56_18
unknown

Not on your lists

comp(16139..16390)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_101_000M1_scaffold_56_19
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16428..17633)
DNA (1206bp) protein (402aa)
Serine dehydratase alpha chain n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A306_9CLOT
Serine dehydratase alpha chain {ECO:0000313|EMBL:CCX37253.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
serine dehydratase alpha chain
L3_101_000M1_scaffold_56_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17647..18384)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A765_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37674.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
phosphoesterase
L3_101_000M1_scaffold_56_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18403..18606)
DNA (204bp) protein (68aa)
UPF0291 protein BACCAP_00627 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR03_9FIRM
UPF0291 protein BACCAP_00627 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_101_000M1_scaffold_56_22
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(18630..20030)
DNA (1401bp) protein (467aa)
Mate efflux family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZJG5_9FIRM
Mate efflux family protein {ECO:0000313|EMBL:CDD30592.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
MATE efflux family protein
L3_101_000M1_scaffold_56_23
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20154..20837)
DNA (684bp) protein (228aa)
HAD hydrolase family IA variant 3 n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9B5_9CLOT
HAD hydrolase family IA variant 3 {ECO:0000313|EMBL:CCX37672.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_101_000M1_scaffold_56_24
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20963..21589)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRY4_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40615.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_101_000M1_scaffold_56_25
unknown

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21793..22557
DNA (765bp) protein (255aa)

This feature has no annotations

L3_101_000M1_scaffold_56_26
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22700..23947
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A762_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37669.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_101_000M1_scaffold_56_27
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

23995..25149
DNA (1155bp) protein (385aa)
Tellurite resistance protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YF72_9FIRM
Tellurite resistance protein {ECO:0000313|EMBL:CDD29989.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L3_101_000M1_scaffold_56_28
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25267..25827
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9B0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37667.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_101_000M1_scaffold_56_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25860..26825
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AE58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37666.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_101_000M1_scaffold_56_30
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26822..27490
DNA (669bp) protein (223aa)
phosphatase (EC:3.1.3.18)
Putative phosphatase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A3K3_9CLOT
Putative phosphatase {ECO:0000313|EMBL:CCX37665.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Displaying items 1-30 of 110 in total

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