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L3_101_000M1_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_28_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(103..1821)
DNA (1719bp) protein (573aa)
HAD hydrolase, family IA, variant 1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL09_9FIRM
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EFB76667.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_101_000M1_scaffold_28_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1818..2717)
DNA (900bp) protein (300aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB76668.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB76668.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rfbF; dTDP-rhamnosyl transferase RfbF (EC:2.-.-.-)
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL10_9FIRM
L3_101_000M1_scaffold_28_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2710..3480)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76669.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative polysaccharide biosynthesis protein
L3_101_000M1_scaffold_28_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3593..5482)
DNA (1890bp) protein (630aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL12_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76670.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_101_000M1_scaffold_28_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5552..6307)
DNA (756bp) protein (252aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02254 (EC:3.8.1.2)
HAD hydrolase, TIGR02254 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL13_9FIRM
HAD hydrolase, TIGR02254 family {ECO:0000313|EMBL:EFB76671.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_101_000M1_scaffold_28_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6330..8009)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76672.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Lysophospholipase L1 and related esterases
L3_101_000M1_scaffold_28_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8196..8990)
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL15_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76673.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, ATPase component
L3_101_000M1_scaffold_28_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8983..9930)
DNA (948bp) protein (316aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL16_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB76674.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, permease component
L3_101_000M1_scaffold_28_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10029..11069)
DNA (1041bp) protein (347aa)
ABC transporter substrate binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL17_9FIRM
ABC transporter substrate binding protein {ECO:0000313|EMBL:EFB76675.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, periplasmic component
L3_101_000M1_scaffold_28_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11311..11784)
DNA (474bp) protein (158aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL18_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EFB76676.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
FruA; phosphotransferase system, fructose-specific IIC component
L3_101_000M1_scaffold_28_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11809..12636)
DNA (828bp) protein (276aa)
Cof-like hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL19_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EFB76677.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
HAD-superfamily hydrolase
L3_101_000M1_scaffold_28_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12633..13565)
DNA (933bp) protein (311aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL20_9FIRM
L3_101_000M1_scaffold_28_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13552..14049)
DNA (498bp) protein (166aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL21_9FIRM
L3_101_000M1_scaffold_28_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14114..16888)
DNA (2775bp) protein (925aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ileS; Isoleucine-tRNA ligase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL22_9FIRM
L3_101_000M1_scaffold_28_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16942..17880)
DNA (939bp) protein (313aa)
DivIVA domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL23_9FIRM
DivIVA domain protein {ECO:0000313|EMBL:EFB76681.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DivIVA domain
L3_101_000M1_scaffold_28_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17949..18758)
DNA (810bp) protein (270aa)
S4 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL24_9FIRM
S4 domain protein {ECO:0000313|EMBL:EFB76682.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized conserved protein, contains S4-like domain
L3_101_000M1_scaffold_28_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18742..19188)
DNA (447bp) protein (149aa)
Cell division protein SepF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL25_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_101_000M1_scaffold_28_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19310..20539)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76684.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_101_000M1_scaffold_28_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20558..21499)
DNA (942bp) protein (314aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL27_9FIRM
L3_101_000M1_scaffold_28_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21483..23561)
DNA (2079bp) protein (693aa)
DNA mismatch repair protein MutL n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL28_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA mismatch repair protein MutL
L3_101_000M1_scaffold_28_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23577..26195)
DNA (2619bp) protein (873aa)
DNA mismatch repair protein MutS n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL29_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA mismatch repair protein MutS
L3_101_000M1_scaffold_28_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26346..26753)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76688.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF964).
L3_101_000M1_scaffold_28_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26790..28172)
DNA (1383bp) protein (461aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL31_9FIRM
L3_101_000M1_scaffold_28_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28528..30477
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_101_000M1_scaffold_28_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30474..31382
DNA (909bp) protein (303aa)
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EFB76559.1}; EC=5.4.99.- {ECO:0000313|EMBL:EFB76559.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ1_9FIRM
RluA family pseudouridine synthase
L3_101_000M1_scaffold_28_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31463..32944)
DNA (1482bp) protein (494aa)
Na+/H+ antiporter family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX2_9FIRM
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CCZ77610.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transporter, NhaC family (TC 2.A.35)
L3_101_000M1_scaffold_28_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32975..34372)
DNA (1398bp) protein (466aa)
Amino acid carrier protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZMI0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFQ05571.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amino acid carrier protein
L3_101_000M1_scaffold_28_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34657..35595)
DNA (939bp) protein (313aa)
Transcriptional regulator, AraC family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8H7_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDP22521.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
AraC family transcription regulator
L3_101_000M1_scaffold_28_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35702..37090
DNA (1389bp) protein (463aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=2 Tax=Faecalibacterium prausnitzii RepID=D4KCZ0_9FIRM
sugar (Glycoside-Pentoside-Hexuronide) transporter
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:EDP22522.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_101_000M1_scaffold_28_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37094..37849
DNA (756bp) protein (252aa)
X-Pro dipeptidyl-peptidase (S15 family) n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCY9_9FIRM
X-Pro dipeptidyl-peptidase (S15 family).
X-Pro dipeptidyl-peptidase (S15 family) {ECO:0000313|EMBL:CBL02702.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Displaying items 1-30 of 174 in total

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