ggKbase home page

L3_101_000M1_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_304_1
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

145..837
DNA (693bp) protein (231aa)
Plasmid mobilization protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6F515_9FIRM
Plasmid mobilization protein {ECO:0000313|EMBL:CDA97102.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
mob protein
L3_101_000M1_scaffold_304_2
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

847..2181
DNA (1335bp) protein (445aa)
Type IV secretory pathway VirD4 component n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EKA9_9FIRM
Type IV secretory pathway VirD4 component {ECO:0000313|EMBL:CDA97101.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Type IV secretory pathway, VirD4 component
L3_101_000M1_scaffold_304_3
unknown

Not on your lists

comp(2221..2394)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_101_000M1_scaffold_304_4
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2396..2965)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GST3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE30474.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_101_000M1_scaffold_304_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3392..4654)
DNA (1263bp) protein (421aa)
Site-specific recombinase XerD n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRF3_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBK95672.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_101_000M1_scaffold_304_6
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4761..4955)
DNA (195bp) protein (65aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Lachnospiraceae RepID=S2YVY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89981.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Excisionase from transposon Tn916.
L3_101_000M1_scaffold_304_7
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5553..6608
DNA (1056bp) protein (352aa)
YqaJ viral recombinase family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2S3_9CLOT
YqaJ viral recombinase family protein {ECO:0000313|EMBL:EEG54370.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
phage-type endonuclease
L3_101_000M1_scaffold_304_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6628..8916
DNA (2289bp) protein (763aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
RecD/TraA family helicase (EC:3.1.11.5)
Putative helicase, RecD/TraA family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P898_9FIRM
L3_101_000M1_scaffold_304_9
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8944..9927
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Clostridium hathewayi RepID=D3ABS6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61607.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L3_101_000M1_scaffold_304_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9949..11076
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2S0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG54367.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_101_000M1_scaffold_304_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11145..11840
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98645.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_101_000M1_scaffold_304_12
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11837..13849
DNA (2013bp) protein (671aa)
Uncharacterized protein n=2 Tax=Eubacterium sp. 14-2 RepID=S0JJV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT28785.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L3_101_000M1_scaffold_304_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13869..14069
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GPW4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93224.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_101_000M1_scaffold_304_14
unknown

Not on your lists

14066..14284
DNA (219bp) protein (73aa)

This feature has no annotations

L3_101_000M1_scaffold_304_15
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14419..14613
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2F8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA13380.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
L3_101_000M1_scaffold_304_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14618..15415
DNA (798bp) protein (266aa)
Death-on-curing family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2F7_9CLOT
Death-on-curing family protein {ECO:0000313|EMBL:EEG54481.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_101_000M1_scaffold_304_17
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15740..16894)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ENR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04559.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_101_000M1_scaffold_304_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17447..18838
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GSH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27380.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_101_000M1_scaffold_304_19
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18850..19848
DNA (999bp) protein (333aa)
Peptidase M20/M25/M40 family n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H086_9FIRM
Peptidase M20/M25/M40 family {ECO:0000313|EMBL:CDB27379.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_101_000M1_scaffold_304_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20051..22024
DNA (1974bp) protein (658aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35284.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_101_000M1_scaffold_304_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22213..22872
DNA (660bp) protein (220aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIC2_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB77590.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two component transcriptional regulator
L3_101_000M1_scaffold_304_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22971..24320
DNA (1350bp) protein (450aa)
Uncharacterized protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77508.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_101_000M1_scaffold_304_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24331..25776
DNA (1446bp) protein (482aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIC4_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_101_000M1_scaffold_304_24
unknown

Not on your lists

25760..26545
DNA (786bp) protein (262aa)

This feature has no annotations

L3_101_000M1_scaffold_304_25
unknown

Not on your lists

26542..27921
DNA (1380bp) protein (460aa)

This feature has no annotations

L3_101_000M1_scaffold_304_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28246..28461)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77578.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_101_000M1_scaffold_304_27
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28637..29554
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FI79_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY01013.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L3_101_000M1_scaffold_304_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29561..29881
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98612.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_101_000M1_scaffold_304_29
Firmicutes bacterium CAG:460, Firmicutes, Bacteria

Not on your lists

30149..31075
DNA (927bp) protein (309aa)
transcriptional regulator n=1 Tax=Anaerococcus obesiensis RepID=UPI0003079EB9
Uncharacterized protein {ECO:0000313|EMBL:CDE49243.1}; TaxID=1263024 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:460.;"
hypothetical protein
L3_101_000M1_scaffold_304_30
unknown

Not on your lists

31131..31568
DNA (438bp) protein (146aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

View Taxonomy