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L3_101_000M1_scaffold_585

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_585_1
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(99..2123)
DNA (2025bp) protein (675aa)
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084, ECO:0000313|EMBL:CBK82608.1}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084, ECO:0000313|EMBL:CBK82608.1};; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
Beta-galactosidase n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HIK3_9FIRM
L3_101_000M1_scaffold_585_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2250..3149)
DNA (900bp) protein (300aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQN8_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75018.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter permease
L3_101_000M1_scaffold_585_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3146..4558)
DNA (1413bp) protein (471aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQN9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75019.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_101_000M1_scaffold_585_4

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comp(4721..6043)
DNA (1323bp) protein (441aa)
Sugar-binding secreted protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T7Y9_9ZZZZ
Sugar-binding secreted protein {ECO:0000313|EMBL:EKC55446.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_101_000M1_scaffold_585_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6451..7590)
DNA (1140bp) protein (380aa)
Transcriptional regulator, LacI family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQP2_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFB75022.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LacI family transcriptional regulator
L3_101_000M1_scaffold_585_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7893..8360
DNA (468bp) protein (156aa)
Hsp20/alpha crystallin family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSC6_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EFB74411.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heat shock protein Hsp20
L3_101_000M1_scaffold_585_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8529..10502
DNA (1974bp) protein (658aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS92_9FIRM
L3_101_000M1_scaffold_585_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10564..12006
DNA (1443bp) protein (481aa)
Dipeptidase {ECO:0000313|EMBL:EDP21286.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDP21286.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
dipeptidase A. Cysteine peptidase. MEROPS family C69 (EC:3.4.-.-)
Dipeptidase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SCN0_9FIRM
L3_101_000M1_scaffold_585_9
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(12070..13215)
DNA (1146bp) protein (382aa)
SipW n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0B9_9FIRM
SipW {ECO:0000313|EMBL:CCX73635.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_101_000M1_scaffold_585_10
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(13233..13775)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73634.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_101_000M1_scaffold_585_11
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(13762..14901)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6L2_CHLAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL23949.1}; Flags: Precursor;; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
L3_101_000M1_scaffold_585_12
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(15155..16573)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DH73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75296.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_101_000M1_scaffold_585_13
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16914..17213)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG30626.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_101_000M1_scaffold_585_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17228..17494)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RS52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL71855.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_101_000M1_scaffold_585_15
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17941..19545
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Clostridium sp. CAG:510 RepID=R6CCA7_9CLOT
L3_101_000M1_scaffold_585_16
unknown

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comp(19691..19849)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_101_000M1_scaffold_585_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19865..21241)
DNA (1377bp) protein (459aa)
Putative efflux protein, MATE family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZJ6_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBK99445.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_585_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21426..21974)
DNA (549bp) protein (183aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.97.1.4 1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPU1_9FIRM
L3_101_000M1_scaffold_585_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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22396..24573
DNA (2178bp) protein (726aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EFB75290.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EFB75290.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPU4_9FIRM
L3_101_000M1_scaffold_585_20
unknown

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24712..25593
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Allobaculum stercoricanis RepID=UPI00036E9B9B
L3_101_000M1_scaffold_585_21
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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25722..26318
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR48144.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L3_101_000M1_scaffold_585_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26546..28099)
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribonuclease Y n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPZ3_9FIRM
conserved hypothetical protein YmdA/YtgF
L3_101_000M1_scaffold_585_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28867..30642)
DNA (1776bp) protein (592aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IF10_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI59939.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
alpha/beta hydrolase fold protein
L3_101_000M1_scaffold_585_24
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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31021..31812
DNA (792bp) protein (264aa)
Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=U2QNQ9_9FIRM
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_101_000M1_scaffold_585_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31965..32708)
DNA (744bp) protein (248aa)
ThiF family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY8_9FIRM
ThiF family protein {ECO:0000313|EMBL:EFB76253.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
L3_101_000M1_scaffold_585_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32831..33316)
DNA (486bp) protein (162aa)
HD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLZ2_9FIRM
HD domain protein {ECO:0000313|EMBL:EFB76257.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_101_000M1_scaffold_585_27
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(33613..34368)
DNA (756bp) protein (252aa)
Uncharacterized protein n=3 Tax=root RepID=R6MDK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94044.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
Displaying 27 items

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