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L3_101_000M1_scaffold_1347

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_1347_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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56..1129
DNA (1074bp) protein (358aa)
Anaerobic sulfatase maturase {ECO:0000313|EMBL:EFB77582.1}; EC=1.1.99.- {ECO:0000313|EMBL:EFB77582.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Anaerobic sulfatase maturase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIB4_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase)
L3_101_000M1_scaffold_1347_2
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1148..1714
DNA (567bp) protein (189aa)
Chromate transporter n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z7B0_EUBE2
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ACR73188.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_101_000M1_scaffold_1347_3
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1711..2277
DNA (567bp) protein (189aa)
Chromate transporter n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z7A9_EUBE2
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ACR73187.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_101_000M1_scaffold_1347_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2305..3390
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77440.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphotransferase enzyme family.
L3_101_000M1_scaffold_1347_5
unknown

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comp(3409..3546)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_101_000M1_scaffold_1347_6
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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comp(3543..3908)
DNA (366bp) protein (122aa)
TnpX site-specific recombinase n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D5V6_9FIRM
TnpX site-specific recombinase {ECO:0000313|EMBL:CCX71281.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_101_000M1_scaffold_1347_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(3930..4247)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LKS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB86480.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_101_000M1_scaffold_1347_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4390..5406)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L962_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16157.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_101_000M1_scaffold_1347_9
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5434..5994)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KQ55_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK99689.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_101_000M1_scaffold_1347_10
Fibrobacter succinogenes, Fibrobacter, Fibrobacterales, Fibrobacteria, Fibrobacteres, Bacteria

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comp(6087..6224)
DNA (138bp) protein (46aa)
Restriction modification system DNA specificity domain protein n=1 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RQV7_FIBSS
hsdS; type I restriction-modification system subunit S
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:ADL26011.1}; TaxID=59374 species="Bacteria; Fibrobacteres; Fibrobacterales; Fibrobacteraceae; Fibrobacter.;" source="Fibrobacter succinogenes (strain ATCC 19169 / S85).;"
L3_101_000M1_scaffold_1347_11
unknown

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comp(6556..6801)
DNA (246bp) protein (82aa)

This feature has no annotations

L3_101_000M1_scaffold_1347_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(7270..8124)
DNA (855bp) protein (285aa)
Transcriptional regulator with cupin sensor AraC family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y327_9FIRM
Transcriptional regulator with cupin sensor AraC family {ECO:0000313|EMBL:CDD30423.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
AraC family transcriptional regulator
L3_101_000M1_scaffold_1347_13
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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8246..8953
DNA (708bp) protein (236aa)
L-fuculose-phosphate aldolase (EC:4.1.2.17)
L-fuculose-phosphate aldolase {ECO:0000313|EMBL:AEE15582.1}; EC=4.1.2.17 {ECO:0000313|EMBL:AEE15582.1};; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L-fuculose-phosphate aldolase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLA4_TREBD
L3_101_000M1_scaffold_1347_14
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8965..9399
DNA (435bp) protein (145aa)
Fucose dissimilation pathway protein FucU (EC:5.1.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A403_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37830.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_101_000M1_scaffold_1347_15
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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9396..10844
DNA (1449bp) protein (483aa)
Rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y927_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:CDD30420.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_101_000M1_scaffold_1347_16
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10861..12645
DNA (1785bp) protein (595aa)
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L-fucose isomerase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLA2_TREBD
L3_101_000M1_scaffold_1347_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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13076..13474
DNA (399bp) protein (133aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=Clostridium hathewayi RepID=D3ABT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61596.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
L3_101_000M1_scaffold_1347_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13471..13659
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1M6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27376.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_101_000M1_scaffold_1347_19

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comp(13844..14803)
DNA (960bp) protein (320aa)
ISCpe5, transposase (Fragment) n=1 Tax=human gut metagenome RepID=K1UNM7_9ZZZZ
ISCpe5, transposase {ECO:0000313|EMBL:EKC79770.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transposase
L3_101_000M1_scaffold_1347_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14959..15834)
DNA (876bp) protein (292aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYU1_9FIRM
PTS system, glucose subfamily, IIA component
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:CBK99190.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying 20 items

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