ggKbase home page

L3_101_000M1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_40_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(269..1324)
DNA (1056bp) protein (352aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components n=1 Tax=Clostridium sp. CAG:81 RepID=R5FZN1_9CLOT
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components {ECO:0000313|EMBL:CCY09064.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_101_000M1_scaffold_40_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1868..3340
DNA (1473bp) protein (491aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
Iron only hydrogenase large subunit C-terminal domain n=1 Tax=Clostridium sp. CAG:81 RepID=R5FVI2_9CLOT
Iron only hydrogenase large subunit C-terminal domain {ECO:0000313|EMBL:CCY09065.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_40_3
unknown

Not on your lists

3464..3577
DNA (114bp) protein (38aa)

This feature has no annotations

L3_101_000M1_scaffold_40_4
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3601..6093
DNA (2493bp) protein (831aa)
ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AV95_SYNWW
ATP-dependent transcriptional regulator-like protein
ATP-dependent transcriptional regulator-like protein {ECO:0000313|EMBL:ABI69359.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
L3_101_000M1_scaffold_40_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6265..9273
DNA (3009bp) protein (1003aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01252.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Na-Ca exchanger/integrin-beta4
L3_101_000M1_scaffold_40_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9219..17450
DNA (8232bp) protein (2744aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01252.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
cbpA; choline binding protein A
L3_101_000M1_scaffold_40_7
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17620..21942)
DNA (4323bp) protein (1441aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6SE96_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC44922.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
CoA-substrate-specific enzyme activase, putative
L3_101_000M1_scaffold_40_8
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22349..23203
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RPB7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL40042.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_101_000M1_scaffold_40_9
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23232..24641
DNA (1410bp) protein (470aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWJ3_9CLOT
L3_101_000M1_scaffold_40_10
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24669..25943
DNA (1275bp) protein (425aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G8I6_9CLOT
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CCY09207.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_40_11
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26395..27288
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5FVX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY09205.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Subtilisin-like serine proteases
L3_101_000M1_scaffold_40_12
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27801..29576
DNA (1776bp) protein (592aa)
Na/Pi-cotransporter n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GQH1_9FIRM
Na/Pi-cotransporter {ECO:0000313|EMBL:CBL40046.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Na/Pi-cotransporter
L3_101_000M1_scaffold_40_13
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29810..30475
DNA (666bp) protein (222aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Clostridiales RepID=D7GQH2_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL40047.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_101_000M1_scaffold_40_14
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30472..31878
DNA (1407bp) protein (469aa)
Signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBL40048.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Signal transduction histidine kinase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GQH3_9FIRM
L3_101_000M1_scaffold_40_15
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32308..33660
DNA (1353bp) protein (451aa)
Amino acid carrier protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G9M9_9CLOT
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CCY09196.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_40_16
unknown

Not on your lists

comp(33498..34028)
DNA (531bp) protein (177aa)

This feature has no annotations

L3_101_000M1_scaffold_40_17
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34510..35583
DNA (1074bp) protein (358aa)
Protein RecA n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GQH7_9FIRM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_101_000M1_scaffold_40_18
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35602..36114
DNA (513bp) protein (171aa)
Regulatory protein RecX n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWH7_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_40_19
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36273..37817
DNA (1545bp) protein (515aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Ribonuclease Y n=1 Tax=Clostridium sp. CAG:81 RepID=R5G8H1_9CLOT
metal dependent phosphohydrolase
L3_101_000M1_scaffold_40_20
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38057..38857
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G9M5_9CLOT
L3_101_000M1_scaffold_40_21
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38898..39434
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
NTP pyrophosphohydrolases including oxidative damage repair enzymes n=1 Tax=Clostridium sp. CAG:81 RepID=R5FZY7_9CLOT
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:CCY09189.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_40_22
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39548..40123
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY09188.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_40_23
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40363..41277
DNA (915bp) protein (305aa)
Tyrosine recombinase XerC n=1 Tax=Clostridium sp. CAG:81 RepID=R5G8G5_9CLOT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
tyrosine recombinase XerD subunit
L3_101_000M1_scaffold_40_24
unknown

Not on your lists

41371..41607
DNA (237bp) protein (79aa)

This feature has no annotations

L3_101_000M1_scaffold_40_25
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41662..42033
DNA (372bp) protein (124aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.13 1.4.1.14)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:52 RepID=R6GHP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB21114.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
L3_101_000M1_scaffold_40_26
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42211..42501)
DNA (291bp) protein (97aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5GF31_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCY11407.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_40_27
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42579..43514
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G2Q8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY11408.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_40_28
Streptococcus sanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

43545..45875
DNA (2331bp) protein (777aa)
Uncharacterized protein n=1 Tax=Streptococcus sanguinis SK1 RepID=F2BIT5_STRSA
Dynamin family {ECO:0000313|EMBL:EGC27631.1}; TaxID=888819 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sanguinis SK678.;"
dynamin
L3_101_000M1_scaffold_40_29
unknown

Not on your lists

45876..46214
DNA (339bp) protein (113aa)

This feature has no annotations

L3_101_000M1_scaffold_40_30
Streptococcus suis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

46244..49552
DNA (3309bp) protein (1103aa)
Uncharacterized protein n=10 Tax=Streptococcus suis RepID=C5VZ87_STRSE
hypothetical protein
Putative ATP-binding protein {ECO:0000313|EMBL:ADE30809.1}; TaxID=423211 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus suis (strain GZ1).;"
Displaying items 1-30 of 124 in total

View Taxonomy