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L3_101_000M1_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_260_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1245
DNA (1245bp) protein (415aa)
Predicted RNA-binding protein homologous to eukaryotic snRNP n=1 Tax=Clostridium sp. CAG:81 RepID=R5G4F9_9CLOT
Predicted RNA-binding protein homologous to eukaryotic snRNP {ECO:0000313|EMBL:CCY11988.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L3_101_000M1_scaffold_260_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1339..2022)
DNA (684bp) protein (228aa)
Precorrin isomerase (EC:5.4.1.2)
Precorrin isomerase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G4F2_9CLOT
Precorrin isomerase {ECO:0000313|EMBL:CCY11983.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_260_3
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2019..3560)
DNA (1542bp) protein (514aa)
adenosylcobyric acid synthase (glutamine-hydrolysing) (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Clostridium sp. CAG:81 RepID=R5GHK8_9CLOT
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_260_4
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3681..4667)
DNA (987bp) protein (329aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX06_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_101_000M1_scaffold_260_5
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4796..5086)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G7W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY11979.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_260_6
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5133..5759)
DNA (627bp) protein (209aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73)
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:CBL42350.1}; EC=3.1.3.73 {ECO:0000313|EMBL:CBL42350.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Fructose-2,6-bisphosphatase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX08_9FIRM
L3_101_000M1_scaffold_260_7
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5756..6511)
DNA (756bp) protein (252aa)
cobalamin 5'-phosphate synthase/cobalamin synthase (EC:2.7.8.26)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Cobalamin synthase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX09_9FIRM
L3_101_000M1_scaffold_260_8
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6508..7704)
DNA (1197bp) protein (399aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:81 RepID=R5GHK4_9CLOT
L3_101_000M1_scaffold_260_9
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7706..9157)
DNA (1452bp) protein (484aa)
cobyrinic acid a,c-diamide synthase (EC:6.3.5.9)
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:CBL42353.1}; EC=6.3.5.9 {ECO:0000313|EMBL:CBL42353.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Cobyrinic acid a,c-diamide synthase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX11_9FIRM
L3_101_000M1_scaffold_260_10
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9370..11085)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GW14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE31614.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_101_000M1_scaffold_260_11
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11153..13174)
DNA (2022bp) protein (674aa)
precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit/precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit (EC:2.1.1.132)
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit/precorrin-6Y C5,15-methyltransferase (Decarboxylating), CbiT subunit {ECO:0000313|EMBL:CBL42354.1}; EC=2.1.1.132 {ECO:0000313|EMBL:CBL42354.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit/precorrin-6Y C5,15-methyltransferase (Decarboxylating), CbiT subunit n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX12_9FIRM
L3_101_000M1_scaffold_260_12
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13171..13911)
DNA (741bp) protein (247aa)
precorrin-3 methyltransferase (EC:2.1.1.131)
Precorrin-3 methyltransferase n=1 Tax=Clostridium sp. CAG:81 RepID=R5GHI6_9CLOT
Precorrin-3 methyltransferase {ECO:0000313|EMBL:CCY11961.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_260_13
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13908..14720)
DNA (813bp) protein (271aa)
precorrin-4 C11-methyltransferase (EC:2.1.1.133)
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:CBL42356.1}; EC=2.1.1.133 {ECO:0000313|EMBL:CBL42356.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Precorrin-4 C11-methyltransferase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX14_9FIRM
L3_101_000M1_scaffold_260_14
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14675..15979)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G7T9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY11959.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_260_15
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16077..17495)
DNA (1419bp) protein (473aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Putative cobalt-precorrin-6A synthase [deacetylating] n=1 Tax=Clostridium sp. CAG:81 RepID=R5G4C4_9CLOT
Cobalamin biosynthesis protein CbiD
L3_101_000M1_scaffold_260_16
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17498..19981)
DNA (2484bp) protein (828aa)
Hydroxymethylbilane synthase {ECO:0000256|SAAS:SAAS00018413}; EC=2.5.1.61 {ECO:0000256|SAAS:SAAS00018413};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Porphobilinogen deaminase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX17_9FIRM
porphobilinogen deaminase
L3_101_000M1_scaffold_260_17
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19985..20677)
DNA (693bp) protein (231aa)
precorrin-2 C20-methyltransferase/cobalt-factor II C20-methyltransferase (EC:2.1.1.130 2.1.1.151)
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase {ECO:0000313|EMBL:CBL42360.1}; EC=2.1.1.130 {ECO:0000313|EMBL:CBL42360.1};; EC=2.1.1.151 {ECO:0000313|EMBL:CBL42360.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX18_9FIRM
L3_101_000M1_scaffold_260_18
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20774..21577)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G3Q0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY11955.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L3_101_000M1_scaffold_260_19
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21705..22985)
DNA (1281bp) protein (427aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase {ECO:0000313|EMBL:CBL42363.1}; EC=6.1.1.11 {ECO:0000313|EMBL:CBL42363.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Seryl-tRNA synthetase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX21_9FIRM
L3_101_000M1_scaffold_260_20
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23069..23896)
DNA (828bp) protein (276aa)
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591, ECO:0000313|EMBL:CBL42364.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Pyridoxal/pyridoxine/pyridoxamine kinase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX22_9FIRM
L3_101_000M1_scaffold_260_21
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23921..24487)
DNA (567bp) protein (189aa)
Predicted membrane protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5GGG9_9CLOT
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CCY11952.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_101_000M1_scaffold_260_22
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24777..25493)
DNA (717bp) protein (239aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase {ECO:0000313|EMBL:CBL42366.1}; EC=2.7.6.2 {ECO:0000313|EMBL:CBL42366.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Thiamine diphosphokinase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX24_9FIRM
L3_101_000M1_scaffold_260_23
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25522..26187)
DNA (666bp) protein (222aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CBL42367.1}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CBL42367.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Ribulose-phosphate 3-epimerase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX25_9FIRM
L3_101_000M1_scaffold_260_24
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26192..27070)
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium sp. CAG:81 RepID=R5G7S9_9CLOT
L3_101_000M1_scaffold_260_25
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27067..29241)
DNA (2175bp) protein (725aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Serine/threonine protein kinase {ECO:0000313|EMBL:CBL42368.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CBL42368.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Serine/threonine protein kinase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX26_9FIRM
L3_101_000M1_scaffold_260_26
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29238..29978)
DNA (741bp) protein (247aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Serine/threonine protein phosphatase {ECO:0000313|EMBL:CBL42369.1}; EC=3.1.3.16 {ECO:0000313|EMBL:CBL42369.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Serine/threonine protein phosphatase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX27_9FIRM
L3_101_000M1_scaffold_260_27
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29975..31096)
DNA (1122bp) protein (374aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX28_9FIRM
L3_101_000M1_scaffold_260_28
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31124..32455)
DNA (1332bp) protein (444aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Sun protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G4A5_9CLOT
sun protein
L3_101_000M1_scaffold_260_29
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32445..33170)
DNA (726bp) protein (242aa)
Predicted Zn-dependent protease n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX29_9FIRM
Predicted Zn-dependent protease
Predicted Zn-dependent protease {ECO:0000313|EMBL:CBL42371.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_101_000M1_scaffold_260_30
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33265..34191)
DNA (927bp) protein (309aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Methionyl-tRNA formyltransferase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX30_9FIRM
Displaying items 1-30 of 48 in total

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