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L3_101_000M1_scaffold_1406

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_000M1_scaffold_1406_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(356..718)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78493.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_101_000M1_scaffold_1406_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(702..959)
DNA (258bp) protein (86aa)
Toxin-antitoxin system, toxin component, HicA family n=4 Tax=Clostridiales RepID=B0G6A6_9FIRM
Toxin-antitoxin system, toxin component, HicA family {ECO:0000313|EMBL:EDR46667.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
YcfA-like protein.
L3_101_000M1_scaffold_1406_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1014..5267)
DNA (4254bp) protein (1418aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356, ECO:0000313|EMBL:CBK98191.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
DNA polymerase III catalytic subunit, PolC type (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U8_9FIRM
L3_101_000M1_scaffold_1406_4
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5378..5986)
DNA (609bp) protein (203aa)
Cell filamentation protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A680_9CLOT
Cell filamentation protein {ECO:0000313|EMBL:EMZ23736.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Protein involved in cell division
L3_101_000M1_scaffold_1406_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5983..7029)
DNA (1047bp) protein (349aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U7_9FIRM
L3_101_000M1_scaffold_1406_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7043..8155)
DNA (1113bp) protein (371aa)
RIP metalloprotease RseP n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U6_9FIRM
RIP metalloprotease RseP
RIP metalloprotease RseP {ECO:0000313|EMBL:CBK98189.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_1406_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8169..9320)
DNA (1152bp) protein (384aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U5_9FIRM
L3_101_000M1_scaffold_1406_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9344..10204)
DNA (861bp) protein (287aa)
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:CBK98187.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Phosphatidate cytidylyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U4_9FIRM
L3_101_000M1_scaffold_1406_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10345..11058)
DNA (714bp) protein (238aa)
Undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Isoprenyl transferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U3_9FIRM
L3_101_000M1_scaffold_1406_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11148..11702)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U2_9FIRM
ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_1406_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11789..12499)
DNA (711bp) protein (237aa)
uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Uridylate kinase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U1_9FIRM
L3_101_000M1_scaffold_1406_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13089..13370
DNA (282bp) protein (94aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3U0_9FIRM
addiction module antitoxin, RelB/DinJ family
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:CBK98183.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_1406_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13363..13638
DNA (276bp) protein (92aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3T9_9FIRM
addiction module toxin, RelE/StbE family
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:CBK98182.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_1406_14
Mannheimia haemolytica, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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13743..13961
DNA (219bp) protein (73aa)
Repressor protein n=3 Tax=Pasteurella haemolytica RepID=S5EZ35_PASHA
repressor protein
Uncharacterized protein {ECO:0000313|EMBL:EEY12377.1}; TaxID=669262 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia haemolytica serotype A2 str. BOVINE.;"
L3_101_000M1_scaffold_1406_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14084..14482)
DNA (399bp) protein (133aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3T8_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK98181.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_101_000M1_scaffold_1406_16
unknown

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14707..14997
DNA (291bp) protein (97aa)

This feature has no annotations

L3_101_000M1_scaffold_1406_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14902..15210)
DNA (309bp) protein (103aa)
Predicted exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3T6_9FIRM
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CBK98179.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying 17 items

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