ggKbase home page

L3_101_044G1_scaffold_246

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_044G1_scaffold_246_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(556..1212)
DNA (657bp) protein (219aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=H7CRZ5_CLOPF
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EDT27320.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_101_044G1_scaffold_246_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1898..3097
DNA (1200bp) protein (400aa)
Peptidase, M23/M37 family n=2 Tax=Clostridium perfringens RepID=Q0TUN5_CLOP1
M24/M37 family peptidase
Peptidase, M23/M37 family {ECO:0000313|EMBL:EDS79649.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_101_044G1_scaffold_246_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3320..4183
DNA (864bp) protein (288aa)
5'-nucleotidase, lipoprotein e(P4) family n=3 Tax=Clostridium perfringens RepID=Q0TUN6_CLOP1
5'-nucleotidase
5'-nucleotidase, lipoprotein e(P4) family {ECO:0000313|EMBL:EDT23869.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4387..4584)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=Q0SWH8_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15497.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_101_044G1_scaffold_246_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5140..5667)
DNA (528bp) protein (176aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BKN1_CLOPF
cbiO; cobalt transporter ATP-binding subunit
L3_101_044G1_scaffold_246_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5669..5932)
DNA (264bp) protein (88aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RF97_CLOPF
cbiO; cobalt transporter ATP-binding subunit
L3_101_044G1_scaffold_246_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5947..6717)
DNA (771bp) protein (257aa)
Cobalt ABC transporter, permease protein CbiQ n=3 Tax=Clostridium perfringens RepID=Q0TUN9_CLOP1
cbiQ; cobalt ABC transporter permease CbiQ
Cobalt ABC transporter, permease protein CbiQ {ECO:0000313|EMBL:EDT23918.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6701..7012)
DNA (312bp) protein (104aa)
Cobalt transport protein CbiN n=10 Tax=Clostridium perfringens RepID=CBIN_CLOPE
cbiN; cobalt transport protein CbiN
Cobalt transport protein CbiN {ECO:0000256|HAMAP-Rule:MF_00330}; Energy-coupling factor transporter probable substrate-capture protein CbiN {ECO:0000256|HAMAP-Rule:MF_00330}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_101_044G1_scaffold_246_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7012..7755)
DNA (744bp) protein (248aa)
Cobalt transport protein CbiM n=8 Tax=Clostridium perfringens RepID=H7CRZ0_CLOPF
cbiM; cobalt transport protein CbiM
Cobalt transport protein CbiM {ECO:0000256|HAMAP-Rule:MF_01462}; Energy-coupling factor transporter probable substrate-capture protein CbiM {ECO:0000256|HAMAP-Rule:MF_01462}; Flags: Precursor;; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_101_044G1_scaffold_246_10
unknown

Not on your lists

comp(8450..8578)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_101_044G1_scaffold_246_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8630..13516)
DNA (4887bp) protein (1629aa)
nagH; hyaluronidase (EC:3.2.1.35)
Hyaluronidase {ECO:0000313|EMBL:EDT72384.1}; EC=3.2.1.35 {ECO:0000313|EMBL:EDT72384.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Hyaluronoglucosaminidase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CW10_CLOPF
L3_101_044G1_scaffold_246_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13779..14168
DNA (390bp) protein (130aa)
Uncharacterized protein CPE0190 n=3 Tax=Clostridium perfringens RepID=Y190_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18628.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_101_044G1_scaffold_246_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14355..15194)
DNA (840bp) protein (280aa)
Uncharacterized HTH-type transcriptional regulator CPE0189 n=9 Tax=Clostridium perfringens RepID=Y189_CLOPE
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EDT15444.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_101_044G1_scaffold_246_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15385..16272)
DNA (888bp) protein (296aa)
ROK family protein n=2 Tax=Clostridium perfringens RepID=Q0TUP5_CLOP1
ROK family protein
ROK family protein {ECO:0000313|EMBL:EDT23909.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16428..16880)
DNA (453bp) protein (151aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=B1BS10_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15485.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_101_044G1_scaffold_246_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16991..18508)
DNA (1518bp) protein (506aa)
Sodium/solute symporter family protein n=4 Tax=Clostridium perfringens RepID=H7CRY4_CLOPF
sodium/solute symporter family protein
Sodium/solute symporter family protein {ECO:0000313|EMBL:EIA18624.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_101_044G1_scaffold_246_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18612..19478)
DNA (867bp) protein (289aa)
nanA; N-acetylneuraminate lyase (EC:4.1.3.3)
N-acetylneuraminate lyase; Short=NAL;; Short=Neu5Ac lyase;; EC=4.1.3.3;; N-acetylneuraminate pyruvate-lyase; N-acetylneuraminic acid aldolase; Sialate lyase; Sialic acid aldolase; Sialic acid lyase; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
N-acetylneuraminate lyase n=7 Tax=Clostridium perfringens RepID=NANA_CLOP1
L3_101_044G1_scaffold_246_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19515..20180)
DNA (666bp) protein (222aa)
nanE; N-acetylmannosamine-6-phosphate 2-epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=7 Tax=Clostridium perfringens RepID=NANE_CLOP1
L3_101_044G1_scaffold_246_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20465..21133)
DNA (669bp) protein (223aa)
Nitroreductase family protein n=2 Tax=Clostridium perfringens RepID=Q0TUQ0_CLOP1
nitroreductase
Nitroreductase family protein {ECO:0000313|EMBL:EDT23875.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21375..22469
DNA (1095bp) protein (365aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium perfringens RepID=Q0TUQ1_CLOP1
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDT23905.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22472..23290
DNA (819bp) protein (273aa)
Putative ABC transporter, permease protein n=2 Tax=Clostridium perfringens RepID=Q0TUQ2_CLOP1
ABC transporter permease
Putative ABC transporter, permease protein {ECO:0000313|EMBL:EDT23862.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23295..24086
DNA (792bp) protein (264aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1R7B6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT23867.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_101_044G1_scaffold_246_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24469..25443)
DNA (975bp) protein (325aa)
Putative esterase n=2 Tax=Clostridium perfringens RepID=B1BKL5_CLOPF
Putative esterase {ECO:0000313|EMBL:EDT27331.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
esterase
L3_101_044G1_scaffold_246_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25792..26247)
DNA (456bp) protein (152aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
S-ribosylhomocysteine lyase n=6 Tax=Clostridium perfringens RepID=LUXS_CLOPE
luxS; S-ribosylhomocysteinase
L3_101_044G1_scaffold_246_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26332..27240)
DNA (909bp) protein (303aa)
Cysteine synthase family protein n=2 Tax=Clostridium perfringens RepID=Q0TUQ6_CLOP1
cysteine synthase
Cysteine synthase family protein {ECO:0000313|EMBL:EDT27338.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_101_044G1_scaffold_246_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27227..28381)
DNA (1155bp) protein (385aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:EDT23897.1}; EC=4.4.1.8 {ECO:0000313|EMBL:EDT23897.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
metC; cystathionine beta-lyase (EC:4.4.1.8)
Cystathionine beta-lyase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R7B2_CLOPF
L3_101_044G1_scaffold_246_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28445..29068)
DNA (624bp) protein (208aa)
UbiE/COQ5 family methyltransferase n=6 Tax=Clostridium perfringens RepID=H7CRX3_CLOPF
Methyltransferase, UbiE/COQ5 family {ECO:0000313|EMBL:EDT23890.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
UbiE/COQ5 family methlytransferase
L3_101_044G1_scaffold_246_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29812..30270
DNA (459bp) protein (153aa)
Large-conductance mechanosensitive channel n=2 Tax=Clostridium perfringens RepID=B1BS23_CLOPF
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
mscL; large-conductance mechanosensitive channel
L3_101_044G1_scaffold_246_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30418..33645)
DNA (3228bp) protein (1076aa)
Microbial collagenase {ECO:0000313|EMBL:EDT15459.1}; EC=3.4.24.3 {ECO:0000313|EMBL:EDT15459.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Microbial collagenase n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BS24_CLOPF
colA; collagenase
L3_101_044G1_scaffold_246_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34241..34696)
DNA (456bp) protein (152aa)
Arginine regulator n=6 Tax=Clostridium perfringens RepID=ARGR1_CLOPE
argR; arginine repressor ArgR
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Displaying items 1-30 of 109 in total

View Taxonomy